Detailed information of deep learning profile BP000676.1

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This page shows detailed deep learning-derived predictions and motifs for NR2F2 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NR2F2
Model ID: BP000676.1
Cell line/tissue: K562
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
JASPAR ID: MA1111.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P24468  
Source: ENCSR000BRS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.04 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.04 0.03 0.00 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.03 0.00 -0.00 0.00 -0.00 0.01 0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 1602 1911 1814 1716 1693 1633 1707 1583 1577 1841 1575 1582 1731 2080 1700 1480 1282 936 961 62 463 7187 47 37 169 440 1649 1735 1921 1256 1502 1584 1431 1622 1638 1742 1589 1468 1533 1886 1693 1580 1626 1644 1716 1735 1676 1772 1751 1648 ]
C [ 2169 1881 1895 1948 2277 1956 1875 1743 1884 1983 2061 2207 1981 1916 2177 2670 2305 2558 2382 173 42 73 7268 7286 1816 3390 1019 1337 1772 2415 2408 2298 2509 2387 2308 2049 2159 2136 2161 1839 2151 2285 2084 2053 2021 1806 2063 2130 1866 2257 ]
G [ 1753 1678 1939 1885 1689 1862 1998 2097 1803 1900 1632 1588 1940 1909 1908 1658 1348 1641 1684 8 6835 81 6 1 61 543 1370 3088 2373 1936 1796 1485 1381 1421 1695 1786 1777 1850 1766 1727 1761 1692 1622 1648 1735 1865 1688 1612 1701 1706 ]
T [ 1829 1883 1705 1804 1694 1902 1773 1930 2089 1629 2085 1976 1701 1448 1568 1545 2418 2218 2326 7110 13 12 32 29 5307 2980 3315 1193 1287 1746 1647 1986 2032 1923 1712 1776 1828 1899 1893 1901 1748 1796 2021 2008 1881 1947 1926 1839 2035 1742 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.01 -0.00 -0.02 0.01 0.04 -0.01 -0.01 -0.02 -0.01 -0.00 0.00 0.00 -0.00 ]
C [ 0.01 0.01 0.00 -0.00 0.01 -0.01 -0.01 0.04 0.03 0.01 0.01 -0.00 0.00 0.00 0.01 ]
G [ 0.00 0.00 0.01 0.01 -0.02 0.03 -0.00 -0.03 -0.01 -0.01 -0.00 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.03 -0.03 -0.03 -0.01 -0.02 0.02 0.01 0.01 -0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 13689

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2006

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 709

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 420

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 69

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 49

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 46

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 21

CWM

PFM

     

HCWM

4 profiles found for the same TF (NR2F2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000677.1 NR2F2 ENCSR000BUY MCF-7 Homo sapiens MA1111.2
BP000678.1 NR2F2 ENCSR000BVM HepG2 Homo sapiens MA1111.2
BP000679.1 NR2F2 ENCSR168SMX liver Homo sapiens MA1111.2
BP000680.1 NR2F2 ENCSR338MMB liver Homo sapiens MA1111.2
Showing 4 profiles of page 1 from 1 pages
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