Detailed information of deep learning profile BP000653.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000653.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR267DFA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.01 0.00 0.00 0.00 0.03 0.04 0.06 0.00 0.05 0.00 0.00 -0.00 0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 0.03 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 -0.00 0.04 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 0.01 -0.00 0.05 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1654 1760 1762 1671 1726 1709 1648 1672 1674 1763 1661 1637 1662 1712 1649 1665 1912 1647 1531 1302 1430 1151 2269 3017 2355 617 0 3865 5103 5541 0 5408 1944 1802 1577 1794 1709 1695 1640 1656 1634 1669 1691 1778 1796 1723 1693 1698 1706 1732 ]
C [ 1139 1181 1116 1143 1122 1132 1111 1111 1123 1061 1127 1106 1116 1146 1158 1138 1079 1023 1187 1497 1680 1881 256 521 32 3 26 1675 427 1 3651 12 971 988 1184 1256 1268 1068 1069 1079 1047 1083 1071 1105 1145 1081 1105 1115 1208 1145 ]
G [ 1139 1089 1086 1138 1141 1095 1178 1090 1189 1183 1066 1146 1115 1104 1168 1127 1056 1244 1151 1241 1477 767 138 1508 897 4855 0 2 1 1 13 31 1182 1317 1801 1237 1089 1160 1221 1243 1245 1155 1244 1140 1108 1164 1180 1198 1099 1138 ]
T [ 1616 1518 1584 1596 1559 1612 1611 1675 1562 1541 1694 1659 1655 1586 1573 1618 1501 1634 1679 1508 961 1749 2885 502 2264 73 5522 6 17 5 1884 97 1451 1441 986 1261 1482 1625 1618 1570 1622 1641 1542 1525 1499 1580 1570 1537 1535 1533 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 0.01 0.02 0.01 0.01 -0.04 0.04 0.04 0.06 -0.06 0.05 0.00 0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.01 0.01 -0.01 -0.01 -0.02 -0.03 0.02 0.03 0.02 -0.03 0.06 -0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.02 0.02 0.00 0.05 -0.04 -0.05 -0.05 -0.03 -0.03 -0.01 0.00 0.01 0.02 0.01 ]
T [ 0.00 0.00 -0.00 0.01 0.02 -0.01 0.02 -0.02 0.06 -0.04 -0.02 -0.02 0.04 -0.02 0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1918

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 685

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 31

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 28

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages