Detailed information of deep learning profile BP000650.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000650.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BRD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.09 0.00 0.01 -0.00 0.02 0.00 ]
C [ 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 -0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.06 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 ]
T [ 0.00 -0.00 0.00 0.00 0.07 0.00 0.09 0.07 0.07 -0.00 0.00 0.01 0.01 0.01 -0.00 ]

Frequency matrix

       
A [ 4675 4875 4592 4560 4573 4635 4652 4709 4672 4844 4638 4565 4604 4885 4614 4499 4954 4873 4417 3869 3239 3678 4150 353 4928 20 73 22 17167 333 7184 1665 8527 4557 3195 4528 5192 4749 4463 4910 4848 4666 4898 4903 5069 4887 4624 4885 4909 4987 ]
C [ 3980 3770 3745 3669 3817 3801 3626 3774 3778 3797 3622 3693 4138 3945 4045 4050 3767 3970 3558 3990 5700 4599 3653 124 21 13 7 3 3 14440 2241 5062 628 2467 4464 4208 3752 3869 3612 3535 3611 3675 3740 3860 3533 3755 3885 3736 3749 3629 ]
G [ 3657 3580 3861 3744 3752 3605 3928 3604 3696 3524 3626 3667 3575 3472 3607 3504 3584 3520 4078 4003 3680 3684 3035 63 12264 6 992 3248 36 52 164 1603 879 6411 4884 4543 3792 3766 3613 3698 3743 3804 3578 3548 3728 3661 3660 3580 3623 3768 ]
T [ 4901 4988 5015 5240 5071 5172 5007 5126 5067 5048 5327 5288 4896 4911 4947 5160 4908 4850 5160 5351 4594 5252 6375 16673 0 17174 16141 13940 7 2388 7624 8883 7179 3778 4670 3934 4477 4829 5525 5070 5011 5068 4997 4902 4883 4910 5044 5012 4932 4829 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 0.01 -0.01 0.06 -0.01 -0.01 -0.04 0.09 -0.01 0.03 -0.01 0.04 0.01 -0.01 0.00 0.00 ]
C [ 0.01 0.02 0.02 0.01 -0.01 -0.04 -0.02 -0.06 -0.06 -0.07 0.07 -0.01 0.03 -0.03 0.01 0.02 0.01 0.01 ]
G [ 0.01 0.02 0.02 0.01 -0.03 0.09 -0.05 0.03 0.04 0.05 -0.03 -0.02 -0.01 -0.01 0.02 0.02 0.02 0.01 ]
T [ 0.00 0.00 0.00 0.02 0.07 -0.08 0.09 0.07 0.09 -0.04 0.02 0.03 0.03 0.02 -0.00 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 7107

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 5677

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1018

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 111

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 38

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 36

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages