Detailed information of deep learning profile BP000649.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000649.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BPX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.03 -0.00 0.00 -0.00 0.00 0.00 ]
C [ -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.02 -0.00 0.00 -0.00 -0.00 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.02 0.00 0.03 0.02 0.02 0.00 0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 866 858 879 873 925 871 894 902 920 820 877 908 863 795 715 544 660 781 84 2 2 18 15 3089 61 1198 302 1452 806 555 798 912 832 848 945 947 938 863 866 940 867 872 903 924 919 895 847 923 866 832 ]
C [ 655 648 654 682 641 616 605 645 635 730 706 654 681 628 684 1082 829 666 12 0 1 14 14 3 2501 389 770 112 438 814 672 648 675 597 634 650 649 598 631 579 691 684 609 605 614 644 648 640 629 655 ]
G [ 591 615 638 618 590 645 637 623 653 593 570 587 621 649 648 620 664 538 7 3100 0 22 680 5 5 40 425 181 1123 782 807 624 584 589 579 646 587 648 655 625 675 587 615 619 679 646 645 581 655 615 ]
T [ 990 981 931 929 946 970 966 932 894 959 949 953 937 1030 1055 856 949 1117 2999 0 3099 3048 2393 5 535 1475 1605 1357 735 951 825 918 1011 1068 944 859 928 993 950 958 869 959 975 954 890 917 962 958 952 1000 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 -0.00 0.02 -0.01 -0.01 -0.02 0.03 -0.00 0.01 -0.00 0.01 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 0.01 0.00 -0.00 -0.01 -0.01 -0.02 -0.02 -0.02 0.03 -0.00 0.01 -0.01 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.02 0.03 -0.01 0.02 0.01 0.01 -0.02 -0.01 -0.00 -0.00 0.01 0.00 0.01 0.00 ]
T [ 0.00 0.00 0.00 0.01 0.02 -0.02 0.03 0.02 0.03 -0.01 0.01 0.01 0.01 0.01 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6255

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1473

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1319

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 802

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 339

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 238

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 59

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 34

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages