Detailed information of deep learning profile BP000647.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000647.1
Cell line/tissue: HepG2
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BLE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.01 0.01 0.00 -0.00 0.07 0.07 0.11 0.00 0.08 0.01 0.00 -0.00 0.00 ]
C [ 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 0.07 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 -0.00 0.07 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 ]
T [ 0.00 0.02 -0.00 0.01 0.00 0.10 0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5228 5132 5131 5257 5031 5207 5066 4978 4939 4990 4872 5159 5298 5098 5230 5576 4964 4605 4206 5135 3988 7276 9065 7190 2093 11 14277 16281 17912 3 17347 6555 5815 4574 5589 5435 5088 4834 5214 5216 5081 4982 5707 5864 5047 4984 5051 5042 5345 5572 ]
C [ 4084 3995 3885 3999 4002 3828 3757 3777 3839 4096 3937 3760 3783 3934 3797 4088 3757 3979 4777 4788 6361 1171 1942 176 42 20 3613 1553 3 13725 54 3143 3645 3750 4576 4259 3546 4234 3891 3683 3617 3720 3717 3758 3633 4066 3659 4233 3890 3827 ]
G [ 3866 4050 4133 3942 3980 4059 3860 4199 4380 3608 3961 3917 3879 3835 3922 3767 3914 3855 4215 4669 2814 714 5072 2875 15592 0 11 15 9 20 104 3935 5020 6450 3960 3722 4372 3789 4055 4307 4425 4678 3900 3683 4312 3950 3974 3754 4101 3816 ]
T [ 4757 4758 4786 4737 4922 4841 5252 4981 4777 5241 5165 5099 4975 5068 4986 4504 5300 5496 4737 3343 4772 8774 1856 7694 208 17904 34 86 11 4187 430 4302 3455 3161 3810 4519 4929 5078 4775 4729 4812 4555 4611 4630 4943 4935 5251 4906 4599 4720 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.02 0.03 0.02 0.02 -0.04 0.09 0.08 0.11 -0.08 0.08 0.02 0.01 0.00 0.01 ]
C [ 0.01 0.02 0.02 0.03 -0.01 -0.01 -0.02 -0.05 0.04 0.05 0.03 -0.05 0.09 -0.04 0.01 0.01 0.02 0.01 ]
G [ 0.01 0.01 0.02 0.01 -0.03 0.03 0.00 0.08 -0.07 -0.09 -0.09 -0.03 -0.05 -0.02 0.01 0.02 0.03 0.01 ]
T [ 0.00 0.00 -0.01 0.01 0.04 -0.01 0.04 -0.01 0.10 -0.05 -0.02 -0.03 0.06 -0.01 0.01 -0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3926

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1561

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1503

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1159

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1027

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 275

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 166

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 161

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000645.1 FOXA1 ENCSR000BKW Ishikawa Homo sapiens MA0148.5
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages