Detailed information of deep learning profile BP000645.1

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This page shows detailed deep learning-derived predictions and motifs for FOXA1 in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA1
Model ID: BP000645.1
Cell line/tissue: Ishikawa
Class: Fork head/winged helix factors
Family: FOX
JASPAR ID: MA0148.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P55317  
Source: ENCSR000BKW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 0.00 -0.00 0.04 0.04 0.05 -0.00 0.04 0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.00 0.01 -0.00 0.01 0.00 0.04 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1687 1636 1629 1613 1699 1593 1626 1611 1612 1737 1661 1574 1737 1730 1652 1380 1374 1518 1075 2406 2886 2754 940 18 5155 5805 6004 1 5880 2148 1904 1564 1741 1725 1649 1644 1619 1691 1603 1591 1712 1730 1693 1611 1706 1624 1680 1656 1709 1699 ]
C [ 1403 1428 1366 1323 1358 1463 1436 1338 1379 1416 1464 1545 1398 1425 1466 1406 1630 1819 2655 372 667 74 63 1552 893 247 11 4525 42 1206 1380 1362 1609 1540 1318 1393 1416 1300 1327 1371 1410 1468 1335 1443 1390 1533 1438 1446 1474 1448 ]
G [ 1425 1504 1441 1556 1499 1591 1497 1454 1569 1390 1401 1368 1344 1465 1490 1470 1646 1730 979 229 1955 985 4907 11 19 12 22 15 37 1458 1645 2099 1407 1369 1452 1437 1512 1543 1541 1492 1380 1328 1491 1463 1474 1360 1452 1464 1456 1411 ]
T [ 1564 1511 1643 1587 1523 1432 1520 1676 1519 1536 1553 1592 1600 1459 1471 1823 1429 1012 1370 3072 571 2266 169 4498 12 15 42 1538 120 1267 1150 1054 1322 1445 1660 1605 1532 1545 1608 1625 1577 1553 1560 1562 1509 1562 1509 1513 1440 1521 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 0.01 0.02 0.01 0.01 -0.04 0.05 0.04 0.05 -0.04 0.04 0.01 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 -0.01 -0.01 -0.02 -0.03 0.03 0.01 0.01 -0.03 0.04 -0.02 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.00 -0.02 0.02 -0.00 0.03 -0.04 -0.03 -0.04 -0.02 -0.03 -0.01 0.00 0.01 0.01 0.01 ]
T [ 0.00 0.00 -0.00 0.00 0.02 -0.01 0.02 -0.01 0.05 -0.04 -0.01 -0.01 0.04 -0.01 0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 402

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 115

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 34

CWM

PFM

     

HCWM

12 profiles found for the same TF (FOXA1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000646.1 FOXA1 ENCSR000BKY T47D Homo sapiens MA0148.5
BP000647.1 FOXA1 ENCSR000BLE HepG2 Homo sapiens MA0148.5
BP000648.1 FOXA1 ENCSR000BMO HepG2 Homo sapiens MA0148.5
BP000649.1 FOXA1 ENCSR000BPX A549 Homo sapiens MA0148.5
BP000650.1 FOXA1 ENCSR000BRD A549 Homo sapiens MA0148.5
BP000651.1 FOXA1 ENCSR094WHO HEK293T Homo sapiens MA0148.5
BP000652.1 FOXA1 ENCSR126YEB MCF-7 Homo sapiens MA0148.5
BP000653.1 FOXA1 ENCSR267DFA HepG2 Homo sapiens MA0148.5
BP000654.1 FOXA1 ENCSR324RCI liver Homo sapiens MA0148.5
BP000655.1 FOXA1 ENCSR735KEY liver Homo sapiens MA0148.5
Showing 10 profiles of page 1 from 2 pages