Detailed information of deep learning profile BP000644.1

  1. Home
  2. Deep Learning Profile > BP000644.1
This page shows detailed deep learning-derived predictions and motifs for USF1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000644.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR787CHF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.07 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.10 -0.00 0.06 -0.00 0.00 0.00 -0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.01 -0.00 0.00 0.00 -0.00 0.09 -0.00 0.11 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3206 3599 3014 3089 3118 3346 3045 2945 3221 3942 3631 3250 3266 3419 2933 2893 4797 1864 69 14585 67 371 68 10 10189 456 2440 3556 3883 3346 2900 2819 2815 3395 3582 3067 2648 3818 4928 4136 3098 3525 4127 3696 3673 3462 3282 3335 3593 3489 ]
C [ 4600 4149 4370 4061 4288 4310 4609 4965 4854 4331 4063 4560 4640 4060 3648 4090 3387 6179 15539 271 9605 273 58 42 1564 11044 6630 4849 4051 4461 4341 5056 4630 3960 4082 5053 6147 5264 3935 4028 4304 4394 4062 4027 4302 3890 4112 4369 4064 4221 ]
G [ 4437 4162 3881 4230 4880 5059 4425 3907 3883 4296 5008 4771 4094 4810 4659 6782 5866 3085 45 321 728 15009 52 15606 2900 1413 2185 3439 4551 4851 4483 3924 4161 4947 5124 4572 3666 3605 3813 3886 4118 4535 4558 4722 4052 4758 4426 4439 4489 4564 ]
T [ 3440 3773 4418 4303 3397 2968 3604 3866 3725 3114 2981 3102 3683 3394 4443 1918 1633 4555 30 506 5283 30 15505 25 1030 2770 4428 3839 3198 3025 3959 3884 4077 3381 2895 2991 3222 2996 3007 3633 4163 3229 2936 3238 3656 3573 3863 3540 3537 3409 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.01 0.01 -0.01 -0.02 0.07 -0.08 0.02 -0.03 -0.05 0.04 -0.03 -0.00 -0.00 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.03 0.01 0.02 0.10 -0.03 0.09 -0.01 0.00 -0.03 0.00 0.05 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.04 0.01 -0.04 0.01 -0.02 0.09 -0.03 0.11 0.02 0.00 0.03 0.01 0.02 0.01 ]
T [ 0.00 0.00 -0.00 -0.00 -0.02 0.02 -0.05 -0.02 0.02 -0.08 0.08 -0.03 -0.02 0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 374

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 317

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 89

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 37

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages