Detailed information of deep learning profile BP000644.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000644.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR787CHF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.11 -0.00 0.09 -0.00 0.00 0.00 -0.00 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.04 -0.00 0.00 0.00 -0.00 0.06 -0.00 0.10 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 0.07 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3409 3537 3540 3863 3573 3656 3238 2936 3229 4163 3633 3007 2996 3222 2991 2895 3381 4077 3884 3959 3025 3198 3839 4428 2770 1030 25 15505 30 5283 506 30 4555 1633 1918 4443 3394 3683 3102 2981 3114 3725 3866 3604 2968 3397 4303 4418 3773 3440 ]
C [ 4564 4489 4439 4426 4758 4052 4722 4558 4535 4118 3886 3813 3605 3666 4572 5124 4947 4161 3924 4483 4851 4551 3439 2185 1413 2900 15606 52 15009 728 321 45 3085 5866 6782 4659 4810 4094 4771 5008 4296 3883 3907 4425 5059 4880 4230 3881 4162 4437 ]
G [ 4221 4064 4369 4112 3890 4302 4027 4062 4394 4304 4028 3935 5264 6147 5053 4082 3960 4630 5056 4341 4461 4051 4849 6630 11044 1564 42 58 273 9605 271 15539 6179 3387 4090 3648 4060 4640 4560 4063 4331 4854 4965 4609 4310 4288 4061 4370 4149 4600 ]
T [ 3489 3593 3335 3282 3462 3673 3696 4127 3525 3098 4136 4928 3818 2648 3067 3582 3395 2815 2819 2900 3346 3883 3556 2440 456 10189 10 68 371 67 14585 69 1864 4797 2893 2933 3419 3266 3250 3631 3942 3221 2945 3045 3346 3118 3089 3014 3599 3206 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 0.02 -0.02 -0.03 0.08 -0.08 0.02 -0.02 -0.05 0.02 -0.02 -0.00 -0.00 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.03 0.00 0.02 0.11 -0.03 0.09 -0.02 0.01 -0.04 0.01 0.04 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.05 0.00 -0.03 0.00 -0.01 0.09 -0.03 0.10 0.02 0.01 0.03 0.01 0.02 0.01 ]
T [ 0.00 0.00 -0.00 -0.00 -0.03 0.04 -0.05 -0.03 0.02 -0.08 0.07 -0.02 -0.01 0.01 -0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 374

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 317

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 89

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 37

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages