Detailed information of deep learning profile BP000639.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000639.1
Cell line/tissue: Ishikawa
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BSX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.09 0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.11 -0.00 0.08 0.00 0.00 0.00 -0.00 0.02 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.03 -0.00 0.00 0.00 0.00 0.05 -0.00 0.11 0.00 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 0.03 0.00 0.00 0.00 -0.00 0.08 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3266 3494 3542 3806 3530 3569 3001 2856 3039 4102 3555 2749 2882 3111 2889 2766 3495 4096 3850 3982 3026 2960 3675 4521 2956 629 11 15238 12 6128 284 9 5724 1143 2056 4319 3284 3799 2802 2815 2888 3748 3838 3344 2791 3433 4149 4556 3744 3368 ]
C [ 4580 4338 4402 4410 4664 3999 4681 4513 4600 4233 3743 3730 3527 3567 4712 5166 4721 3882 3753 4282 4764 4431 3392 2171 1360 2468 15326 40 14624 1653 278 28 2504 7557 7068 4600 4690 4086 4819 5260 4305 3783 3875 4546 5108 4798 4409 3775 3961 4255 ]
G [ 4069 3893 4273 3917 3889 4069 3969 3986 4294 3954 3858 3864 5349 6045 4773 3792 3901 4690 5143 4394 4277 4106 4862 6530 10579 1611 20 67 546 7554 218 15300 5635 2781 3047 3552 4167 4575 4426 3840 4169 4789 4848 4511 4054 4124 3959 4090 4201 4725 ]
T [ 3460 3650 3158 3242 3292 3738 3724 4020 3442 3086 4219 5032 3617 2652 3001 3651 3258 2707 2629 2717 3308 3878 3446 2153 480 10667 18 30 193 40 14595 38 1512 3894 3204 2904 3234 2915 3328 3460 4013 3055 2814 2974 3422 3020 2858 2954 3469 3027 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 0.00 0.02 -0.02 -0.02 0.09 -0.08 0.02 -0.03 -0.05 0.04 -0.02 -0.00 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.01 -0.00 0.01 0.11 -0.02 0.09 -0.01 0.00 -0.05 0.00 0.04 0.02 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.02 0.05 0.00 -0.05 -0.01 -0.00 0.09 -0.02 0.11 0.01 0.00 0.02 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.00 -0.01 -0.03 0.05 -0.05 -0.03 0.02 -0.08 0.08 -0.02 -0.01 0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 857

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 298

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 60

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages