Detailed information of deep learning profile BP000638.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000638.1
Cell line/tissue: A549
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BPV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.00 -0.00 0.00 0.04 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.10 -0.00 0.06 0.00 0.00 0.00 -0.00 0.03 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.01 -0.00 0.00 0.00 0.00 0.08 0.00 0.10 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 0.09 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1299 1203 1288 1188 1119 1118 1370 1119 1093 1235 1350 1142 1033 1179 1629 1310 1198 1191 1307 1103 1133 1557 721 22 5758 19 510 7 8 4838 145 677 1235 1702 1277 1118 994 1018 1176 1342 1159 1029 1430 2024 1713 1129 1264 1541 1497 1553 ]
C [ 1928 1997 1811 1900 1938 1883 1625 1621 1542 1628 1541 1779 1933 1937 1683 1432 1689 1728 1616 1566 1238 1097 2426 5986 88 3915 238 12 12 311 4242 2577 2192 1517 1651 1660 2014 1926 1541 1512 1937 2524 2185 1559 1471 1591 1720 1543 1526 1516 ]
G [ 1631 1515 1560 1675 1609 1755 1542 1549 1819 1930 2099 1842 1553 1426 1644 2219 2105 1758 2067 1653 2907 2896 1216 17 104 283 5277 17 6000 762 575 913 1354 1808 2014 1768 1638 1514 1965 2161 1910 1417 1381 1423 1457 1668 1888 1899 1887 1626 ]
T [ 1176 1319 1375 1271 1368 1278 1497 1745 1580 1241 1044 1271 1515 1492 1078 1073 1042 1357 1044 1712 756 484 1671 9 84 1817 9 5998 14 123 1072 1867 1253 1007 1092 1488 1388 1576 1352 1019 1028 1064 1038 1028 1393 1646 1162 1051 1124 1339 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 0.02 -0.01 -0.02 0.07 -0.07 0.02 -0.04 -0.04 0.05 -0.03 -0.01 0.00 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.02 0.00 0.01 0.10 -0.03 0.08 -0.02 0.01 -0.04 -0.00 0.04 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.03 0.00 -0.04 0.01 -0.03 0.08 -0.03 0.10 0.01 -0.01 0.02 0.01 0.01 0.01 ]
T [ 0.00 0.00 0.00 -0.00 -0.02 0.04 -0.04 -0.03 0.02 -0.07 0.09 -0.02 -0.02 0.02 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1482

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 446

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 78

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 43

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 27

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages