Detailed information of deep learning profile BP000637.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000637.1
Cell line/tissue: SK-N-SH
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BMF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.14 0.00 0.02 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 -0.00 0.00 0.20 -0.00 0.15 -0.00 0.00 0.00 -0.00 0.03 0.01 0.01 ]
G [ 0.00 0.00 0.01 0.01 0.06 -0.00 0.00 0.00 0.00 0.07 -0.00 0.19 0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.05 -0.00 -0.00 0.00 -0.00 0.12 -0.00 -0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4482 4651 4831 5022 4757 4861 4245 4186 4240 5413 4783 3964 4139 4256 3997 3900 4620 5221 5006 5178 4351 4148 4953 6084 4583 925 17 19488 13 9428 517 11 7102 1593 2863 5312 4536 4816 4032 3966 4101 5010 5115 4729 4145 4707 5342 5828 4986 4640 ]
C [ 5433 5289 5310 5381 5638 4933 5637 5441 5583 5016 4711 4556 4541 4485 5693 6246 5760 4998 4871 5199 5894 5371 4164 2767 1551 4067 19662 52 19271 1084 451 38 3207 9334 8507 5776 5753 5155 5653 6237 5157 4582 4774 5465 5989 5725 5363 4669 4885 5253 ]
G [ 5101 4902 5160 4868 4798 4960 4967 4959 5288 4994 4750 4974 6260 7013 5762 4708 4723 5583 5926 5331 5229 5174 5814 8014 12915 2100 16 83 112 9124 425 19561 7129 3619 3966 4567 5042 5577 5450 4810 5173 5772 5877 5384 5031 5136 4956 5110 5209 5609 ]
T [ 4682 4856 4397 4427 4505 4944 4849 5112 4587 4275 5454 6204 4758 3944 4246 4844 4595 3896 3895 3990 4224 5005 4767 2833 649 12606 3 75 302 62 18305 88 2260 5152 4362 4043 4367 4150 4563 4685 5267 4334 3932 4120 4533 4130 4037 4091 4618 4196 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 0.00 0.04 -0.03 -0.04 0.14 -0.13 0.04 -0.04 -0.09 0.05 -0.05 -0.01 -0.00 0.00 0.00 ]
C [ 0.02 0.03 0.02 0.03 -0.00 0.04 0.20 -0.04 0.15 -0.02 0.00 -0.06 0.01 0.07 0.04 0.03 0.02 0.02 ]
G [ 0.02 0.02 0.03 0.04 0.08 0.00 -0.05 -0.01 0.00 0.16 -0.04 0.19 0.04 0.01 0.03 0.02 0.03 0.02 ]
T [ 0.00 0.00 0.00 -0.01 -0.06 0.07 -0.09 -0.05 0.04 -0.14 0.12 -0.04 -0.02 0.03 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1065

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 998

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 808

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 380

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 262

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 229

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 26

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 24

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages