Detailed information of deep learning profile BP000636.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000636.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BKT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.01 -0.00 0.00 0.10 -0.00 0.00 -0.00 0.00 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.17 -0.00 0.08 0.00 0.00 0.00 -0.00 0.06 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.00 0.00 0.00 0.12 0.00 0.18 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 0.00 0.12 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4417 4927 4077 4251 4481 4802 4238 4108 4458 5550 4923 4628 4462 4930 4070 4022 6349 2717 115 18606 158 1204 78 37 15372 362 3479 4603 5414 4767 3980 4011 4033 4613 5007 4356 3806 5211 6825 5773 4352 4798 5721 5118 5171 4719 4617 4664 5146 4859 ]
C [ 5769 5269 5306 5075 5340 5297 5682 6154 6165 5319 4932 5468 5689 5185 4506 4732 4078 7845 20066 551 11187 1414 112 113 1455 14830 7963 6019 5288 5415 5423 6306 5738 4937 4861 6129 7769 6736 4818 4861 5138 5412 4900 5077 5174 4852 5012 5323 5035 5245 ]
G [ 5424 5006 4683 5405 5927 6132 5492 4727 4591 5292 6406 6067 5152 5753 5561 8711 8025 3840 144 440 1766 17701 78 20202 2616 1123 2465 4183 5542 5878 5492 4769 5057 6055 6506 5816 4428 4410 4665 4731 5127 5660 5654 5922 4988 5780 5459 5442 5438 5655 ]
T [ 4776 5184 6320 5655 4638 4155 4974 5397 5172 4225 4125 4223 5083 4518 6249 2921 1934 5984 61 789 7275 67 20118 34 943 4071 6479 5581 4142 4326 5491 5300 5558 4781 4012 4085 4383 4029 4078 5021 5769 4516 4111 4269 5053 5035 5298 4957 4767 4627 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.00 0.03 -0.02 -0.02 0.10 -0.10 0.03 -0.04 -0.08 0.07 -0.06 -0.00 0.01 0.01 0.00 ]
C [ 0.02 0.02 0.02 0.03 0.01 0.02 0.17 -0.03 0.14 0.00 -0.00 -0.06 -0.00 0.08 0.03 0.02 0.02 0.01 ]
G [ 0.01 0.02 0.03 0.03 0.06 0.01 -0.06 0.01 -0.01 0.14 -0.03 0.18 0.02 -0.01 0.02 0.02 0.02 0.01 ]
T [ 0.00 0.00 0.00 -0.00 -0.04 0.05 -0.08 -0.02 0.03 -0.11 0.12 -0.03 -0.03 0.04 0.00 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1365

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 545

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 333

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 59

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 53

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 33

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages