Detailed information of deep learning profile BP000636.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000636.1
Cell line/tissue: K562
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BKT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.12 0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.18 0.00 0.12 0.00 0.00 0.00 -0.00 0.02 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.06 -0.00 0.00 0.00 0.00 0.08 -0.00 0.17 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.06 0.00 -0.00 0.00 -0.00 0.10 0.00 -0.00 0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4627 4767 4957 5298 5035 5053 4269 4111 4516 5769 5021 4078 4029 4383 4085 4012 4781 5558 5300 5491 4326 4142 5581 6479 4071 943 34 20118 67 7275 789 61 5984 1934 2921 6249 4518 5083 4223 4125 4225 5172 5397 4974 4155 4638 5655 6320 5184 4776 ]
C [ 5655 5438 5442 5459 5780 4988 5922 5654 5660 5127 4731 4665 4410 4428 5816 6506 6055 5057 4769 5492 5878 5542 4183 2465 1123 2616 20202 78 17701 1766 440 144 3840 8025 8711 5561 5753 5152 6067 6406 5292 4591 4727 5492 6132 5927 5405 4683 5006 5424 ]
G [ 5245 5035 5323 5012 4852 5174 5077 4900 5412 5138 4861 4818 6736 7769 6129 4861 4937 5738 6306 5423 5415 5288 6019 7963 14830 1455 113 112 1414 11187 551 20066 7845 4078 4732 4506 5185 5689 5468 4932 5319 6165 6154 5682 5297 5340 5075 5306 5269 5769 ]
T [ 4859 5146 4664 4617 4719 5171 5118 5721 4798 4352 5773 6825 5211 3806 4356 5007 4613 4033 4011 3980 4767 5414 4603 3479 362 15372 37 78 1204 158 18606 115 2717 6349 4022 4070 4930 4462 4628 4923 5550 4458 4108 4238 4802 4481 4251 4077 4927 4417 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 0.00 0.04 -0.03 -0.03 0.12 -0.11 0.03 -0.02 -0.08 0.05 -0.04 -0.00 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.02 0.02 -0.01 0.02 0.18 -0.03 0.14 -0.01 0.01 -0.06 0.01 0.06 0.03 0.03 0.02 0.01 ]
G [ 0.01 0.02 0.02 0.03 0.08 -0.00 -0.06 -0.00 0.00 0.14 -0.03 0.17 0.02 0.01 0.03 0.02 0.02 0.02 ]
T [ 0.00 0.01 0.01 -0.00 -0.06 0.07 -0.08 -0.04 0.03 -0.10 0.10 -0.02 -0.02 0.03 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1365

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 545

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 333

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 59

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 53

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 33

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000632.1 USF1 ENCSR000BGM HepG2 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages