Detailed information of deep learning profile BP000632.1

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This page shows detailed deep learning-derived predictions and motifs for USF1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: USF1
Model ID: BP000632.1
Cell line/tissue: HepG2
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0093.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCSR000BGM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.09 -0.00 0.00 -0.00 0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.15 -0.00 0.08 -0.00 0.00 0.00 -0.00 0.05 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.00 0.00 -0.00 0.11 -0.00 0.15 0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 0.00 0.12 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4606 4968 4387 4510 4789 5012 4480 4380 4667 5532 5013 4786 4815 4934 4407 4194 6644 2748 70 20538 42 1137 20 7 15995 532 3199 4792 5199 4815 4384 4070 4290 4948 5066 4554 4200 5372 6502 5742 4487 4890 5687 5271 5326 4869 4881 4682 5206 4931 ]
C [ 6302 5952 6001 5704 5809 5777 6298 6721 6712 6150 5738 6458 6238 5727 5014 4997 4697 9718 21775 421 13400 703 21 9 1722 15748 9934 6651 5856 5897 5786 6635 6354 5547 5558 6729 7923 7027 5676 5556 5925 6172 5722 5668 5922 5644 5654 5932 5740 5775 ]
G [ 6050 5635 5322 5923 6334 6651 5983 5265 5245 5616 6711 6267 5535 6431 6176 9671 8300 3926 9 374 999 20011 37 21845 3162 1285 2578 4521 6022 6593 6337 5625 5735 6455 6840 6177 5059 5047 5242 5368 5741 6019 6057 6297 5428 6187 5909 5984 5864 6161 ]
T [ 4907 5310 6155 5728 4933 4425 5104 5499 5241 4567 4403 4354 5277 4773 6268 3003 2224 5473 11 532 7424 14 21787 4 986 4300 6154 5901 4788 4560 5358 5535 5486 4915 4401 4405 4683 4419 4445 5199 5712 4784 4399 4629 5189 5165 5421 5267 5055 4998 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.01 0.02 -0.01 -0.02 0.10 -0.11 0.03 -0.03 -0.06 0.06 -0.04 -0.01 0.00 0.00 0.00 ]
C [ 0.01 0.02 0.01 0.02 0.01 0.02 0.15 -0.04 0.12 -0.01 -0.01 -0.06 -0.00 0.06 0.03 0.02 0.01 0.01 ]
G [ 0.01 0.01 0.02 0.03 0.05 0.00 -0.07 -0.00 -0.03 0.12 -0.04 0.15 0.02 -0.01 0.02 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.00 -0.01 -0.03 0.05 -0.06 -0.02 0.03 -0.10 0.12 -0.03 -0.02 0.03 -0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 821

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 160

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 77

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 62

CWM

PFM

     

HCWM

13 profiles found for the same TF (USF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000631.1 USF1 ENCSR000BGI GM12878 Homo sapiens MA0093.4
BP000633.1 USF1 ENCSR000BHX A549 Homo sapiens MA0093.4
BP000634.1 USF1 ENCSR000BIU H1 Homo sapiens MA0093.4
BP000635.1 USF1 ENCSR000BJB A549 Homo sapiens MA0093.4
BP000636.1 USF1 ENCSR000BKT K562 Homo sapiens MA0093.4
BP000637.1 USF1 ENCSR000BMF SK-N-SH Homo sapiens MA0093.4
BP000638.1 USF1 ENCSR000BPV A549 Homo sapiens MA0093.4
BP000639.1 USF1 ENCSR000BSX Ishikawa Homo sapiens MA0093.4
BP000640.1 USF1 ENCSR000BTZ SK-N-SH Homo sapiens MA0093.4
BP000641.1 USF1 ENCSR000BVK HCT116 Homo sapiens MA0093.4
Showing 10 profiles of page 1 from 2 pages