Detailed information of deep learning profile BP000614.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000614.1
Cell line/tissue: MCF-7
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DMM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.00 0.01 0.05 0.00 0.06 0.00 0.01 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.06 0.00 0.05 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1005 962 967 962 948 998 952 905 1056 976 968 955 980 933 980 894 868 964 932 949 1142 1546 781 37 5223 4 330 338 10 374 672 1043 959 959 870 1034 916 884 958 953 959 868 924 930 946 967 904 934 947 922 ]
C [ 1807 1818 1789 1801 1815 1745 1750 1793 1748 1754 1713 1801 1841 1894 1857 1649 2165 1979 1553 1862 1433 1359 2279 5537 14 5250 4 1229 59 877 2895 1777 1796 1544 1909 1809 1798 1728 1716 1755 1843 1937 1873 1839 1846 1744 1855 1885 1754 1858 ]
G [ 1838 1927 1947 1935 1937 1993 1940 1991 1928 1992 2074 1960 1946 1938 1881 2183 1803 1829 2335 2046 2364 1875 2153 10 217 9 5250 21 5350 3753 990 1762 1904 2274 2047 1927 1994 2106 2056 1903 1909 1896 1864 1911 1851 1965 1891 1850 1898 1892 ]
T [ 936 879 883 888 886 850 944 897 854 864 831 870 819 821 868 860 750 814 766 729 647 806 373 2 132 323 2 3998 167 582 1029 1004 927 809 760 816 878 868 856 975 875 885 925 906 943 910 936 917 987 914 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.00 -0.00 -0.01 0.03 -0.06 0.01 -0.02 -0.04 -0.02 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 ]
C [ 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.02 0.01 0.01 0.01 0.05 -0.04 0.07 -0.03 0.04 -0.01 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.02 0.02 -0.01 0.04 -0.02 0.07 -0.04 0.05 0.02 0.01 0.01 0.01 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
T [ -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.02 -0.04 -0.02 0.01 -0.06 0.03 -0.01 -0.00 -0.00 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1550

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1461

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1036

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 532

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 223

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages