Detailed information of deep learning profile BP000617.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in MCF 10A using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000617.1
Cell line/tissue: MCF 10A
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DOM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.07 0.00 0.08 0.00 0.00 0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.08 0.00 0.06 0.01 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 743 788 756 750 781 708 839 747 758 749 737 712 812 731 664 678 796 769 926 1115 618 8 3057 3 8 298 7 151 435 698 630 563 650 778 683 740 747 736 748 718 743 734 789 716 762 725 770 760 779 782 ]
C [ 849 807 822 848 781 845 795 850 841 816 854 900 866 855 845 973 892 909 694 650 1008 3159 5 3191 7 375 78 326 1413 918 795 973 900 789 908 835 828 784 850 889 872 854 850 822 816 841 786 821 811 825 ]
G [ 863 842 892 871 872 901 852 905 875 812 913 861 808 855 959 854 857 842 979 862 1379 32 91 1 3186 8 2936 2201 493 719 1004 953 956 923 959 923 931 923 908 845 880 864 825 874 890 875 874 887 901 874 ]
T [ 746 764 731 732 767 747 715 699 727 824 697 728 715 760 733 696 656 681 602 574 196 2 48 6 0 2520 180 523 860 866 772 712 695 711 651 703 695 758 695 749 706 749 737 789 733 760 771 733 710 720 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.01 0.01 -0.00 0.04 -0.06 0.03 -0.01 -0.03 -0.02 -0.01 0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.02 0.07 -0.06 0.08 -0.04 0.05 -0.02 0.02 0.02 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.02 -0.03 0.05 -0.04 0.08 -0.06 0.06 0.02 0.00 0.01 0.01 ]
T [ -0.00 0.00 -0.01 -0.02 -0.03 -0.01 0.04 -0.06 0.04 -0.00 0.01 0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 13144

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 3189

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 910

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 707

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 107

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000608.1 MYC ENCSR000DKU GM12878 Homo sapiens MA0147.4
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages