Detailed information of deep learning profile BP000608.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000608.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DKU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 0.00 -0.00 0.03 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 0.00 0.00 0.04 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.06 0.00 0.04 0.01 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 267 279 273 260 306 281 227 270 273 232 259 303 256 284 276 243 227 272 244 328 399 339 2 1568 0 17 66 4 89 233 264 254 231 283 268 279 253 305 264 289 242 266 261 279 263 260 259 272 269 280 ]
C [ 538 478 522 522 545 525 555 536 532 554 569 509 548 552 548 577 634 516 532 410 602 479 1612 0 1468 0 0 8 261 729 506 515 559 533 506 512 496 494 520 532 561 529 555 518 506 525 550 507 556 542 ]
G [ 532 574 512 578 503 519 526 543 518 578 516 537 528 500 516 525 512 568 574 675 341 700 2 3 0 1603 0 1559 1113 312 509 613 549 568 592 568 604 575 541 565 547 571 505 536 543 547 530 521 506 502 ]
T [ 283 289 313 260 266 295 312 271 297 256 276 271 288 284 280 275 247 264 270 207 278 102 4 49 152 0 1554 49 157 346 341 238 281 236 254 261 267 246 295 234 270 254 299 287 308 288 281 320 289 296 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.00 -0.02 0.03 -0.04 0.01 -0.02 -0.02 -0.02 -0.01 -0.01 -0.00 ]
C [ 0.01 -0.00 0.01 0.00 0.04 -0.05 0.05 -0.05 0.02 -0.03 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 -0.00 0.01 -0.03 0.02 -0.05 0.06 -0.04 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.01 -0.01 -0.01 -0.02 -0.01 -0.02 0.01 -0.04 0.03 -0.01 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 37

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages