Detailed information of deep learning profile BP000608.1

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This page shows detailed deep learning-derived predictions and motifs for MYC in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MYC
Model ID: BP000608.1
Cell line/tissue: GM12878
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0147.4
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P61244  
Source: ENCSR000DKU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.03 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.01 0.04 0.00 0.06 0.00 0.00 0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.04 0.00 0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.03 -0.00 0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 296 289 320 281 288 308 287 299 254 270 234 295 246 267 261 254 236 281 238 341 346 157 49 1554 0 152 49 4 102 278 207 270 264 247 275 280 284 288 271 276 256 297 271 312 295 266 260 313 289 283 ]
C [ 502 506 521 530 547 543 536 505 571 547 565 541 575 604 568 592 568 549 613 509 312 1113 1559 0 1603 0 3 2 700 341 675 574 568 512 525 516 500 528 537 516 578 518 543 526 519 503 578 512 574 532 ]
G [ 542 556 507 550 525 506 518 555 529 561 532 520 494 496 512 506 533 559 515 506 729 261 8 0 0 1468 0 1612 479 602 410 532 516 634 577 548 552 548 509 569 554 532 536 555 525 545 522 522 478 538 ]
T [ 280 269 272 259 260 263 279 261 266 242 289 264 305 253 279 268 283 231 254 264 233 89 4 66 17 0 1568 2 339 399 328 244 272 227 243 276 284 256 303 259 232 273 270 227 281 306 260 273 279 267 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 -0.01 0.03 -0.04 0.01 -0.02 -0.01 -0.02 -0.01 -0.01 -0.01 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.04 0.06 -0.05 0.02 -0.03 0.01 -0.00 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.03 0.02 -0.05 0.05 -0.05 0.04 0.00 0.01 -0.00 0.01 ]
T [ -0.00 -0.01 -0.01 -0.02 -0.02 -0.02 0.01 -0.04 0.03 -0.02 0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1385

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 37

CWM

PFM

     

HCWM

22 profiles found for the same TF (MYC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000609.1 MYC ENCSR000DLN HeLa-S3 Homo sapiens MA0147.4
BP000610.1 MYC ENCSR000DLR HepG2 Homo sapiens MA0147.4
BP000611.1 MYC ENCSR000DLU endothelial cell of umbilical vein Homo sapiens MA0147.4
BP000612.1 MYC ENCSR000DLZ K562 Homo sapiens MA0147.4
BP000613.1 MYC ENCSR000DMJ MCF-7 Homo sapiens MA0147.4
BP000614.1 MYC ENCSR000DMM MCF-7 Homo sapiens MA0147.4
BP000615.1 MYC ENCSR000DMP MCF-7 Homo sapiens MA0147.4
BP000616.1 MYC ENCSR000DMQ MCF-7 Homo sapiens MA0147.4
BP000617.1 MYC ENCSR000DOM MCF 10A Homo sapiens MA0147.4
BP000618.1 MYC ENCSR000DOS MCF 10A Homo sapiens MA0147.4
Showing 10 profiles of page 1 from 3 pages