Detailed information of deep learning profile BP000597.1

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This page shows detailed deep learning-derived predictions and motifs for REST in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000597.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR892DRK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 -0.00 0.15 0.00 -0.00 0.01 -0.01 -0.00 -0.00 0.10 -0.00 0.13 -0.00 -0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.09 0.00 -0.00 0.03 -0.00 0.19 0.10 0.00 0.01 0.00 0.00 -0.00 0.07 0.00 -0.00 0.05 -0.00 0.03 0.04 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.13 0.00 0.00 0.00 0.00 -0.00 -0.00 0.15 0.22 -0.00 0.00 0.00 0.15 -0.00 0.03 0.00 -0.00 ]
T [ -0.00 0.00 0.02 0.06 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.03 0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 624 600 609 672 601 609 684 618 639 598 632 703 623 531 401 161 201 2209 100 237 2501 7 61 1371 436 55 27 2279 62 2487 110 372 623 405 321 664 654 596 561 698 550 683 455 536 589 560 635 599 544 502 ]
C [ 601 615 672 695 698 670 618 658 615 611 665 556 545 629 358 486 1952 55 102 1304 6 2528 2317 313 429 13 2 134 1917 22 22 1406 72 1411 1659 904 616 570 775 681 869 676 795 768 728 689 699 647 630 709 ]
G [ 684 698 688 658 706 711 696 686 635 749 621 670 745 688 560 267 141 219 2262 602 14 2 22 192 199 2463 2506 41 417 14 2382 289 1106 502 111 312 704 899 725 719 594 637 644 640 656 644 634 709 726 717 ]
T [ 629 625 569 513 533 548 540 576 649 580 620 609 625 690 1219 1624 244 55 74 395 17 1 138 662 1474 7 3 84 142 15 24 471 737 220 447 658 564 473 477 440 525 542 644 594 565 645 570 583 638 610 ]

Hypothetical CWM

   
A [ -0.01 0.01 0.01 0.01 -0.05 -0.02 0.08 -0.02 -0.03 0.15 -0.01 -0.03 0.04 -0.01 -0.04 -0.03 0.11 -0.05 0.13 0.02 -0.03 0.02 0.01 0.00 -0.00 0.01 -0.00 ]
C [ 0.02 0.02 0.02 -0.01 0.03 0.10 0.03 0.01 0.06 -0.04 0.19 0.11 0.04 0.06 0.07 -0.08 0.03 0.09 0.03 -0.04 0.09 -0.06 0.06 0.06 0.04 0.02 0.02 ]
G [ 0.03 0.03 0.02 0.02 0.00 -0.01 0.04 0.14 0.05 -0.01 -0.02 0.00 0.03 0.03 0.15 0.22 -0.05 0.06 -0.04 0.16 0.02 0.10 0.04 -0.02 0.02 0.02 0.02 ]
T [ -0.00 -0.01 0.01 0.04 0.08 0.00 -0.08 -0.03 0.02 -0.03 -0.06 0.04 0.02 0.06 -0.08 -0.02 -0.01 0.01 -0.05 -0.05 0.02 0.03 -0.03 0.01 0.00 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2756

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1044

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 883

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 647

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 285

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 176

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 108

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 35

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
BP000583.1 REST ENCSR000BOZ SK-N-SH Homo sapiens MA0138.3
BP000584.1 REST ENCSR000BPK Panc1 Homo sapiens MA0138.3
BP000585.1 REST ENCSR000BQP A549 Homo sapiens MA0138.3
BP000586.1 REST ENCSR000BQS GM12878 Homo sapiens MA0138.3
BP000587.1 REST ENCSR000BSP MCF-7 Homo sapiens MA0138.3
BP000588.1 REST ENCSR000BTF HL-60 Homo sapiens MA0138.3
BP000589.1 REST ENCSR000BUP Panc1 Homo sapiens MA0138.3
BP000590.1 REST ENCSR000BUU Ishikawa Homo sapiens MA0138.3
BP000591.1 REST ENCSR000BVI HCT116 Homo sapiens MA0138.3
Showing 10 profiles of page 2 from 3 pages