Detailed information of deep learning profile BP000597.1

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This page shows detailed deep learning-derived predictions and motifs for REST in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000597.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR892DRK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.03 -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.06 0.02 0.00 -0.00 ]
C [ -0.00 0.00 0.03 -0.00 0.15 0.00 0.00 -0.00 0.22 0.15 -0.00 -0.00 0.00 0.00 0.00 0.00 0.13 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.04 0.03 -0.00 0.05 -0.00 0.00 0.07 -0.00 0.00 0.00 0.01 0.00 0.10 0.19 -0.00 0.03 -0.00 0.00 0.09 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.01 -0.00 0.13 -0.00 0.10 -0.00 -0.00 -0.01 0.01 -0.00 0.00 0.15 -0.00 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 610 638 583 570 645 565 594 644 542 525 440 477 473 564 658 447 220 737 471 24 15 142 84 3 7 1474 662 138 1 17 395 74 55 244 1624 1219 690 625 609 620 580 649 576 540 548 533 513 569 625 629 ]
C [ 717 726 709 634 644 656 640 644 637 594 719 725 899 704 312 111 502 1106 289 2382 14 417 41 2506 2463 199 192 22 2 14 602 2262 219 141 267 560 688 745 670 621 749 635 686 696 711 706 658 688 698 684 ]
G [ 709 630 647 699 689 728 768 795 676 869 681 775 570 616 904 1659 1411 72 1406 22 22 1917 134 2 13 429 313 2317 2528 6 1304 102 55 1952 486 358 629 545 556 665 611 615 658 618 670 698 695 672 615 601 ]
T [ 502 544 599 635 560 589 536 455 683 550 698 561 596 654 664 321 405 623 372 110 2487 62 2279 27 55 436 1371 61 7 2501 237 100 2209 201 161 401 531 623 703 632 598 639 618 684 609 601 672 609 600 624 ]

Hypothetical CWM

   
A [ 0.01 -0.00 0.00 0.01 -0.03 0.03 0.02 -0.05 -0.05 0.01 -0.01 -0.02 -0.08 0.06 0.02 0.04 -0.06 -0.03 0.02 -0.03 -0.08 0.00 0.08 0.04 0.01 -0.01 -0.00 ]
C [ 0.02 0.02 0.02 -0.02 0.04 0.10 0.02 0.16 -0.04 0.06 -0.05 0.22 0.15 0.03 0.03 0.00 -0.02 -0.01 0.05 0.14 0.04 -0.01 0.00 0.02 0.02 0.03 0.03 ]
G [ 0.02 0.02 0.04 0.06 0.06 -0.06 0.09 -0.04 0.03 0.09 0.03 -0.08 0.07 0.06 0.04 0.11 0.19 -0.04 0.06 0.01 0.03 0.10 0.03 -0.01 0.02 0.02 0.02 ]
T [ -0.00 0.01 -0.00 0.00 0.01 0.02 -0.03 0.02 0.13 -0.05 0.11 -0.03 -0.04 -0.01 0.04 -0.03 -0.01 0.15 -0.03 -0.02 0.08 -0.02 -0.05 0.01 0.01 0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2756

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1044

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 883

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 647

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 285

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 176

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 108

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 35

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages