Detailed information of deep learning profile BP000596.1

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This page shows detailed deep learning-derived predictions and motifs for REST in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000596.1
Cell line/tissue: GM23338
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR871KYB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.01 0.00 -0.01 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.07 0.02 -0.00 -0.01 ]
C [ -0.00 -0.00 0.00 0.04 -0.00 0.22 0.00 0.00 -0.00 0.26 0.24 -0.00 -0.00 0.00 0.00 0.00 0.00 0.19 0.00 -0.00 0.00 0.00 0.01 0.01 ]
G [ 0.02 0.06 0.05 -0.00 0.08 -0.00 0.00 0.12 -0.00 0.00 0.00 0.01 -0.00 0.14 0.25 0.00 0.04 0.00 -0.00 0.11 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.19 -0.00 0.14 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 0.22 -0.01 -0.00 0.11 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 683 654 656 637 748 653 659 696 616 579 518 556 536 649 754 486 231 926 488 18 18 149 93 3 5 1720 816 135 6 12 496 114 115 360 1653 1199 701 690 664 711 643 757 665 624 639 599 577 598 677 695 ]
C [ 822 810 791 721 706 775 718 722 732 702 816 814 1014 788 334 104 549 1213 315 2746 8 414 38 2827 2813 206 216 23 3 14 643 2405 317 200 362 667 802 811 771 739 853 716 781 796 814 812 783 794 777 797 ]
G [ 790 761 758 802 778 809 902 934 746 1002 775 877 679 719 1051 1944 1700 83 1618 11 15 2276 184 3 3 463 347 2641 2848 12 1477 190 131 2023 651 552 782 673 683 754 712 722 766 714 766 789 733 772 687 690 ]
T [ 572 642 662 707 635 630 588 515 773 584 758 620 638 711 728 333 387 645 446 92 2826 28 2552 34 46 478 1488 68 10 2829 251 158 2304 284 201 449 582 693 749 663 659 672 655 733 648 667 774 703 726 685 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 0.03 -0.05 0.05 0.02 -0.06 -0.09 0.05 -0.02 -0.04 -0.09 0.08 0.03 0.02 -0.02 -0.05 0.07 -0.07 -0.11 0.01 0.10 0.04 0.01 -0.01 -0.01 ]
C [ 0.02 0.03 0.03 0.03 -0.04 0.05 0.13 0.00 0.22 -0.00 0.07 -0.04 0.27 0.24 -0.02 0.06 0.01 -0.03 -0.01 0.07 0.20 0.07 -0.02 0.02 0.02 0.05 0.03 0.04 ]
G [ 0.03 0.03 0.04 0.07 0.09 0.09 -0.09 0.15 -0.05 0.01 0.16 0.05 -0.09 0.04 0.11 0.02 0.15 0.25 -0.07 0.09 0.03 0.03 0.13 0.05 -0.02 0.03 0.03 0.04 ]
T [ -0.01 -0.01 -0.01 0.00 -0.01 0.03 0.02 -0.03 0.01 0.19 -0.13 0.15 -0.00 -0.02 -0.01 0.07 -0.04 -0.03 0.22 -0.05 -0.03 0.12 -0.01 -0.06 0.02 0.01 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1373

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 450

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 101

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
BP000583.1 REST ENCSR000BOZ SK-N-SH Homo sapiens MA0138.3
BP000584.1 REST ENCSR000BPK Panc1 Homo sapiens MA0138.3
BP000585.1 REST ENCSR000BQP A549 Homo sapiens MA0138.3
BP000586.1 REST ENCSR000BQS GM12878 Homo sapiens MA0138.3
BP000587.1 REST ENCSR000BSP MCF-7 Homo sapiens MA0138.3
BP000588.1 REST ENCSR000BTF HL-60 Homo sapiens MA0138.3
BP000589.1 REST ENCSR000BUP Panc1 Homo sapiens MA0138.3
BP000590.1 REST ENCSR000BUU Ishikawa Homo sapiens MA0138.3
BP000591.1 REST ENCSR000BVI HCT116 Homo sapiens MA0138.3
Showing 10 profiles of page 2 from 3 pages