Detailed information of deep learning profile BP000596.1

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This page shows detailed deep learning-derived predictions and motifs for REST in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000596.1
Cell line/tissue: GM23338
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR871KYB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 -0.00 0.11 -0.00 -0.01 0.22 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.14 -0.00 0.19 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.11 -0.00 0.00 0.04 0.00 0.25 0.14 -0.00 0.01 0.00 0.00 -0.00 0.12 0.00 -0.00 0.08 -0.00 0.05 0.06 0.02 ]
G [ 0.01 0.01 0.00 0.00 -0.00 0.00 0.19 0.00 0.00 0.00 0.00 -0.00 -0.00 0.24 0.26 -0.00 0.00 0.00 0.22 -0.00 0.04 0.00 -0.00 -0.00 ]
T [ -0.01 -0.00 0.02 0.07 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.01 0.00 -0.01 ]

Frequency matrix

       
A [ 685 726 703 774 667 648 733 655 672 659 663 749 693 582 449 201 284 2304 158 251 2829 10 68 1488 478 46 34 2552 28 2826 92 446 645 387 333 728 711 638 620 758 584 773 515 588 630 635 707 662 642 572 ]
C [ 690 687 772 733 789 766 714 766 722 712 754 683 673 782 552 651 2023 131 190 1477 12 2848 2641 347 463 3 3 184 2276 15 11 1618 83 1700 1944 1051 719 679 877 775 1002 746 934 902 809 778 802 758 761 790 ]
G [ 797 777 794 783 812 814 796 781 716 853 739 771 811 802 667 362 200 317 2405 643 14 3 23 216 206 2813 2827 38 414 8 2746 315 1213 549 104 334 788 1014 814 816 702 732 722 718 775 706 721 791 810 822 ]
T [ 695 677 598 577 599 639 624 665 757 643 711 664 690 701 1199 1653 360 115 114 496 12 6 135 816 1720 5 3 93 149 18 18 488 926 231 486 754 649 536 556 518 579 616 696 659 653 748 637 656 654 683 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.01 0.02 -0.06 -0.01 0.12 -0.03 -0.05 0.22 -0.03 -0.04 0.07 -0.01 -0.02 -0.00 0.15 -0.13 0.19 0.01 -0.03 0.02 0.03 -0.01 0.00 -0.01 -0.01 -0.01 ]
C [ 0.04 0.03 0.03 -0.02 0.05 0.13 0.03 0.03 0.09 -0.07 0.25 0.15 0.02 0.11 0.04 -0.09 0.05 0.16 0.01 -0.05 0.15 -0.09 0.09 0.09 0.07 0.04 0.03 0.03 ]
G [ 0.04 0.03 0.05 0.02 0.02 -0.02 0.07 0.20 0.07 -0.01 -0.03 0.01 0.06 -0.02 0.24 0.27 -0.04 0.07 -0.00 0.22 0.00 0.13 0.05 -0.04 0.03 0.03 0.03 0.02 ]
T [ -0.01 -0.01 0.01 0.04 0.10 0.01 -0.11 -0.07 0.07 -0.05 -0.02 0.02 0.03 0.08 -0.09 -0.04 -0.02 0.05 -0.09 -0.06 0.02 0.05 -0.05 0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1373

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 450

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 178

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 101

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages