Detailed information of deep learning profile BP000594.1

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This page shows detailed deep learning-derived predictions and motifs for REST in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000594.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR663WAR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.02 -0.01 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.07 0.03 0.00 -0.00 -0.01 ]
C [ -0.00 -0.00 0.01 0.04 0.00 0.17 -0.00 0.00 -0.00 0.23 0.20 -0.00 0.00 0.00 0.00 0.00 0.01 0.21 0.00 -0.00 -0.00 0.00 0.01 0.00 0.01 ]
G [ 0.02 0.05 0.04 -0.00 0.07 -0.00 0.00 0.09 -0.00 0.00 0.00 0.01 0.00 0.13 0.24 0.00 0.04 0.00 0.00 0.13 0.00 -0.00 0.00 0.00 0.01 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.14 -0.00 0.10 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.20 -0.01 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 ]

Frequency matrix

       
A [ 543 509 488 492 581 501 518 533 455 466 387 405 402 457 554 371 200 624 386 27 19 130 82 3 6 1202 547 115 2 6 277 11 19 145 1523 1073 582 532 539 542 512 572 520 452 461 463 434 444 518 541 ]
C [ 630 664 626 552 590 605 564 568 577 554 641 661 817 618 287 102 465 998 268 2090 12 361 44 2183 2160 188 181 14 3 15 552 2168 85 64 242 513 643 653 597 574 682 587 617 647 639 655 615 640 612 612 ]
G [ 606 581 592 645 572 626 688 744 599 770 591 685 496 562 803 1467 1223 75 1219 15 22 1695 155 7 4 434 300 2047 2214 2 1223 23 14 1913 379 317 539 488 513 591 549 527 574 552 613 615 586 600 526 537 ]
T [ 445 470 518 535 481 492 454 379 593 434 605 473 509 587 580 284 336 527 351 92 2171 38 1943 31 54 400 1196 48 5 2201 172 22 2106 102 80 321 460 551 575 517 481 538 513 573 511 491 589 540 568 534 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.00 -0.01 0.01 -0.06 0.02 -0.01 -0.08 -0.07 0.02 -0.04 -0.01 -0.09 0.06 0.01 0.02 -0.06 -0.08 0.03 -0.09 -0.13 0.00 0.10 0.05 0.01 -0.01 -0.01 ]
C [ 0.02 0.03 0.02 0.02 -0.03 0.06 0.11 0.03 0.18 -0.03 0.05 -0.01 0.23 0.21 -0.00 0.06 0.02 -0.01 -0.03 0.08 0.21 0.06 -0.06 0.02 0.03 0.04 0.03 0.04 ]
G [ 0.02 0.03 0.02 0.06 0.08 0.07 -0.08 0.13 -0.04 0.02 0.12 0.05 -0.10 0.04 0.09 0.04 0.14 0.24 -0.03 0.09 0.00 0.03 0.14 0.05 -0.03 0.03 0.02 0.05 ]
T [ -0.00 -0.01 -0.00 -0.01 -0.01 0.01 -0.00 -0.04 0.00 0.14 -0.09 0.11 -0.04 -0.04 -0.03 0.04 -0.06 -0.03 0.20 -0.06 -0.03 0.10 -0.02 -0.08 0.00 -0.00 0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1102

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 455

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 296

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 208

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
BP000583.1 REST ENCSR000BOZ SK-N-SH Homo sapiens MA0138.3
BP000584.1 REST ENCSR000BPK Panc1 Homo sapiens MA0138.3
BP000585.1 REST ENCSR000BQP A549 Homo sapiens MA0138.3
BP000586.1 REST ENCSR000BQS GM12878 Homo sapiens MA0138.3
BP000587.1 REST ENCSR000BSP MCF-7 Homo sapiens MA0138.3
BP000588.1 REST ENCSR000BTF HL-60 Homo sapiens MA0138.3
BP000589.1 REST ENCSR000BUP Panc1 Homo sapiens MA0138.3
BP000590.1 REST ENCSR000BUU Ishikawa Homo sapiens MA0138.3
BP000591.1 REST ENCSR000BVI HCT116 Homo sapiens MA0138.3
Showing 10 profiles of page 2 from 3 pages