Detailed information of deep learning profile BP000594.1

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This page shows detailed deep learning-derived predictions and motifs for REST in H1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000594.1
Cell line/tissue: H1
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR663WAR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.10 -0.00 -0.01 0.20 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 0.10 -0.00 0.14 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.01 0.00 0.00 -0.00 0.00 0.13 0.00 0.00 0.04 0.00 0.24 0.13 0.00 0.01 0.00 0.00 -0.00 0.09 0.00 -0.00 0.07 -0.00 0.04 0.05 0.02 ]
G [ 0.01 0.00 0.01 0.00 -0.00 -0.00 0.00 0.21 0.01 0.00 0.00 0.00 0.00 -0.00 0.20 0.23 -0.00 0.00 -0.00 0.17 0.00 0.04 0.01 -0.00 -0.00 ]
T [ -0.01 -0.00 0.00 0.03 0.07 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.01 0.02 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 534 568 540 589 491 511 573 513 538 481 517 575 551 460 321 80 102 2106 22 172 2201 5 48 1196 400 54 31 1943 38 2171 92 351 527 336 284 580 587 509 473 605 434 593 379 454 492 481 535 518 470 445 ]
C [ 537 526 600 586 615 613 552 574 527 549 591 513 488 539 317 379 1913 14 23 1223 2 2214 2047 300 434 4 7 155 1695 22 15 1219 75 1223 1467 803 562 496 685 591 770 599 744 688 626 572 645 592 581 606 ]
G [ 612 612 640 615 655 639 647 617 587 682 574 597 653 643 513 242 64 85 2168 552 15 3 14 181 188 2160 2183 44 361 12 2090 268 998 465 102 287 618 817 661 641 554 577 568 564 605 590 552 626 664 630 ]
T [ 541 518 444 434 463 461 452 520 572 512 542 539 532 582 1073 1523 145 19 11 277 6 2 115 547 1202 6 3 82 130 19 27 386 624 200 371 554 457 402 405 387 466 455 533 518 501 581 492 488 509 543 ]

Hypothetical CWM

   
A [ -0.01 0.01 -0.00 0.00 -0.08 -0.02 0.10 -0.03 -0.06 0.20 -0.03 -0.06 0.04 -0.03 -0.04 -0.04 0.11 -0.09 0.14 0.00 -0.04 -0.00 0.01 -0.01 -0.01 -0.00 -0.01 -0.00 ]
C [ 0.05 0.02 0.03 -0.03 0.05 0.14 0.03 0.00 0.09 -0.03 0.24 0.14 0.04 0.09 0.04 -0.10 0.05 0.12 0.02 -0.04 0.13 -0.08 0.07 0.08 0.06 0.02 0.03 0.02 ]
G [ 0.04 0.03 0.04 0.03 0.02 -0.06 0.06 0.21 0.08 -0.03 -0.01 0.02 0.06 -0.00 0.21 0.23 -0.01 0.05 -0.03 0.18 0.03 0.11 0.06 -0.03 0.02 0.02 0.03 0.02 ]
T [ -0.01 -0.01 0.01 0.05 0.10 0.00 -0.13 -0.09 0.03 -0.08 -0.06 0.02 0.01 0.06 -0.09 -0.01 -0.04 0.02 -0.07 -0.08 -0.01 0.02 -0.06 0.01 -0.01 -0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1217

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1102

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 455

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 296

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 208

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages