Detailed information of deep learning profile BP000593.1

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This page shows detailed deep learning-derived predictions and motifs for REST in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000593.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR137ZMQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 -0.00 0.11 -0.00 -0.00 0.02 -0.01 -0.00 -0.00 0.05 -0.00 0.07 -0.00 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.06 -0.00 -0.00 0.02 0.00 0.14 0.07 -0.00 0.00 0.00 -0.00 -0.00 0.05 0.00 -0.00 0.02 -0.00 0.02 0.02 ]
G [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.10 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.11 0.12 -0.00 0.00 -0.00 0.10 -0.00 0.02 0.00 -0.00 ]
T [ -0.00 0.00 0.01 0.03 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 140 146 118 144 146 144 149 129 118 139 115 160 150 137 94 30 17 546 6 44 555 1 22 261 147 20 34 429 15 526 53 86 143 106 99 130 153 137 132 169 117 170 140 151 116 135 167 135 140 133 ]
C [ 116 122 157 145 172 145 129 150 111 121 145 118 127 144 76 102 499 5 4 288 0 552 481 83 57 4 2 73 407 11 10 232 39 259 297 170 113 131 171 131 185 116 139 142 132 131 135 127 134 147 ]
G [ 155 144 140 136 123 121 136 134 142 166 125 134 134 136 117 73 8 4 540 155 0 2 3 30 55 529 514 21 94 8 483 123 225 109 50 89 155 183 141 141 126 130 144 136 167 130 121 168 150 143 ]
T [ 144 143 140 130 114 145 141 142 184 129 170 143 144 138 268 350 31 0 5 68 0 0 49 181 296 2 5 32 39 10 9 114 148 81 109 166 134 104 111 114 127 139 132 126 140 159 132 125 131 132 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.06 -0.03 -0.03 0.11 -0.04 -0.03 0.04 -0.02 -0.02 -0.00 0.07 -0.06 0.07 0.00 -0.02 0.01 0.01 0.00 0.01 0.01 -0.00 ]
C [ 0.01 0.01 0.00 -0.02 0.00 0.07 -0.00 0.01 0.05 -0.03 0.14 0.08 0.01 0.05 0.02 -0.04 0.01 0.08 -0.00 -0.02 0.06 -0.03 0.04 0.04 0.03 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 -0.01 0.02 0.10 0.02 -0.01 -0.02 0.01 0.01 -0.01 0.11 0.12 -0.01 0.03 0.01 0.11 0.01 0.05 0.02 -0.01 0.00 0.02 0.02 ]
T [ 0.00 -0.00 0.01 0.03 0.05 -0.00 -0.06 -0.03 0.01 -0.04 -0.02 0.01 0.01 0.05 -0.04 -0.02 -0.02 0.02 -0.04 -0.04 0.01 0.01 -0.02 0.00 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 14541

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1441

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1078

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 478

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 260

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 213

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 163

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 61

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 54

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000582.1 REST ENCSR000BOX PFSK-1 Homo sapiens MA0138.3
BP000583.1 REST ENCSR000BOZ SK-N-SH Homo sapiens MA0138.3
BP000584.1 REST ENCSR000BPK Panc1 Homo sapiens MA0138.3
BP000585.1 REST ENCSR000BQP A549 Homo sapiens MA0138.3
BP000586.1 REST ENCSR000BQS GM12878 Homo sapiens MA0138.3
BP000587.1 REST ENCSR000BSP MCF-7 Homo sapiens MA0138.3
BP000588.1 REST ENCSR000BTF HL-60 Homo sapiens MA0138.3
BP000589.1 REST ENCSR000BUP Panc1 Homo sapiens MA0138.3
BP000590.1 REST ENCSR000BUU Ishikawa Homo sapiens MA0138.3
BP000591.1 REST ENCSR000BVI HCT116 Homo sapiens MA0138.3
Showing 10 profiles of page 2 from 3 pages