Detailed information of deep learning profile BP000593.1

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This page shows detailed deep learning-derived predictions and motifs for REST in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP000593.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
JASPAR ID: MA0138.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR137ZMQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.03 0.01 0.00 -0.00 ]
C [ -0.00 0.00 0.02 -0.00 0.10 -0.00 0.00 -0.00 0.12 0.11 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.10 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.02 0.02 -0.00 0.02 -0.00 0.00 0.05 -0.00 -0.00 0.00 0.00 -0.00 0.07 0.14 0.00 0.02 -0.00 -0.00 0.06 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 0.00 0.00 -0.00 -0.00 0.07 -0.00 0.05 -0.00 -0.00 -0.01 0.02 -0.00 -0.00 0.11 -0.00 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 132 131 125 132 159 140 126 132 139 127 114 111 104 134 166 109 81 148 114 9 10 39 32 5 2 296 181 49 0 0 68 5 0 31 350 268 138 144 143 170 129 184 142 141 145 114 130 140 143 144 ]
C [ 143 150 168 121 130 167 136 144 130 126 141 141 183 155 89 50 109 225 123 483 8 94 21 514 529 55 30 3 2 0 155 540 4 8 73 117 136 134 134 125 166 142 134 136 121 123 136 140 144 155 ]
G [ 147 134 127 135 131 132 142 139 116 185 131 171 131 113 170 297 259 39 232 10 11 407 73 2 4 57 83 481 552 0 288 4 5 499 102 76 144 127 118 145 121 111 150 129 145 172 145 157 122 116 ]
T [ 133 140 135 167 135 116 151 140 170 117 169 132 137 153 130 99 106 143 86 53 526 15 429 34 20 147 261 22 1 555 44 6 546 17 30 94 137 150 160 115 139 118 129 149 144 146 144 118 146 140 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 0.00 -0.02 0.01 0.01 -0.04 -0.04 0.02 -0.02 -0.02 -0.04 0.05 0.01 0.01 -0.02 -0.04 0.01 -0.03 -0.06 -0.00 0.05 0.03 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.00 -0.01 0.02 0.05 0.01 0.11 0.01 0.03 -0.01 0.12 0.11 -0.01 0.01 0.01 -0.02 -0.01 0.02 0.10 0.02 -0.01 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.03 0.04 0.04 -0.03 0.06 -0.02 -0.00 0.08 0.01 -0.04 0.02 0.05 0.01 0.08 0.14 -0.03 0.05 0.01 -0.00 0.07 0.00 -0.02 0.00 0.01 0.01 ]
T [ -0.00 0.01 0.01 0.00 0.01 0.01 -0.02 0.00 0.07 -0.06 0.07 -0.00 -0.02 -0.02 0.04 -0.03 -0.04 0.11 -0.03 -0.03 0.06 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 14541

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1441

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1078

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 478

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 260

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 213

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 163

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_16

Num. of seqlets: 61

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_17

Num. of seqlets: 57

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 54

CWM

PFM

     

HCWM

27 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000572.1 REST ENCSR000ATM K562 Homo sapiens MA0138.3
BP000573.1 REST ENCSR000BGF GM12878 Homo sapiens MA0138.3
BP000574.1 REST ENCSR000BHM H1 Homo sapiens MA0138.3
BP000575.1 REST ENCSR000BJJ SK-N-SH Homo sapiens MA0138.3
BP000576.1 REST ENCSR000BJL HepG2 Homo sapiens MA0138.3
BP000577.1 REST ENCSR000BJO Panc1 Homo sapiens MA0138.3
BP000578.1 REST ENCSR000BJP PFSK-1 Homo sapiens MA0138.3
BP000579.1 REST ENCSR000BMN HeLa-S3 Homo sapiens MA0138.3
BP000580.1 REST ENCSR000BMW K562 Homo sapiens MA0138.3
BP000581.1 REST ENCSR000BOT HepG2 Homo sapiens MA0138.3
Showing 10 profiles of page 1 from 3 pages