Detailed information of deep learning profile BP000444.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in testis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000444.1
Cell line/tissue: testis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR981CID
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.06 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.06 0.04 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4434 3879 3591 5545 7554 5093 3595 4708 3601 4123 4986 5176 5271 5274 4502 2780 4439 5710 1807 458 13893 1111 3244 16683 275 7573 1403 503 952 3426 7929 2408 3159 7141 3795 5892 4460 5143 4791 4525 5383 6482 4350 5098 5443 5720 5439 5293 5199 5194 ]
C [ 4639 3228 5010 6306 3900 3644 3048 4717 8645 7158 6170 5527 4969 4484 5077 6476 4089 2004 15823 19257 772 11661 7510 439 88 195 917 394 1247 13223 1607 9245 6323 4581 3959 3730 3546 5251 6276 7228 6043 4064 5299 4626 4459 4471 4597 4686 4900 4941 ]
G [ 4887 6897 6849 3392 4517 4667 4118 4340 2866 3259 4256 4470 4389 3849 4759 2791 6733 8612 1137 136 2672 6641 1312 1796 19450 11911 11101 18480 15952 1202 9053 5939 2411 5614 5258 4346 8112 5232 4859 3087 3405 5221 5210 5293 5020 4438 4423 5374 5299 5204 ]
T [ 6015 5971 4525 4732 4004 6571 9214 6210 4863 5435 4563 4802 5346 6368 5637 7928 4714 3649 1208 124 2638 562 7909 1057 162 296 6554 598 1824 2124 1386 2383 8082 2639 6963 6007 3857 4349 4049 5135 5144 4208 5116 4958 5053 5346 5516 4622 4577 4636 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.03 -0.02 -0.01 0.07 -0.04 0.03 -0.05 -0.04 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.02 0.10 0.05 0.01 -0.01 -0.04 0.01 -0.02 -0.02 0.09 -0.01 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.01 0.02 0.15 0.11 0.08 0.13 0.09 -0.02 0.09 0.04 0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.07 -0.03 -0.05 0.04 -0.03 -0.04 -0.06 0.02 -0.03 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1000

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 224

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 192

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 32

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000311.1 CTCF ENCSR575WYM middle frontal area 46 Homo sapiens MA0139.2
BP000312.1 CTCF ENCSR578AKX heart left ventricle Homo sapiens MA0139.2
BP000313.1 CTCF ENCSR582MTM lower leg skin Homo sapiens MA1929.2
BP000314.1 CTCF ENCSR585JVS heart right ventricle Homo sapiens MA0139.2
BP000315.1 CTCF ENCSR585KBH body of pancreas Homo sapiens MA0139.2
BP000316.1 CTCF ENCSR587KPW heart right ventricle Homo sapiens MA0139.2
BP000317.1 CTCF ENCSR594NSU gastrocnemius medialis Homo sapiens MA0139.2
BP000318.1 CTCF ENCSR595BPR spleen Homo sapiens MA0139.2
BP000319.1 CTCF ENCSR597TGH HCT116 Homo sapiens MA0139.2
BP000320.1 CTCF ENCSR601FEB spleen Homo sapiens MA0139.2
Showing 10 profiles of page 32 from 45 pages