Detailed information of deep learning profile BP000312.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000312.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR578AKX
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.17 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4341 4495 4279 4144 4233 5116 4807 4673 4483 4659 3837 4854 4768 3743 3957 3409 5688 6771 2048 8045 1987 1001 1732 1598 267 6457 178 140 1206 7004 662 2642 195 1384 3472 4434 6938 5049 5552 4801 4493 4275 4915 4749 5581 7668 5895 3932 4472 4313 ]
C [ 5013 4727 4911 4981 5192 4298 4250 4869 5194 5054 4998 2987 2741 4584 5083 7881 4002 4858 5396 1860 5488 9039 749 15815 18040 10428 10932 18201 1679 1543 6767 2804 223 1435 7924 6075 3007 4592 3930 4261 4401 4222 3506 3109 4308 4258 4464 4411 3644 6007 ]
G [ 4756 4637 4672 4713 4430 4271 4171 4169 4312 5110 3748 5989 7179 6202 4954 3305 3444 3827 4556 6150 9446 1005 13229 805 79 657 157 73 478 7125 9933 1012 17560 13871 2224 3896 5935 4764 4314 4855 5149 5720 6336 7199 4586 3207 3729 3958 5523 4737 ]
T [ 4584 4835 4832 4856 4839 5009 5466 4983 4705 3871 6111 4864 4006 4165 4700 4099 5560 3238 6694 2639 1773 7649 2984 476 308 1152 7427 280 15331 3022 1332 12236 716 2004 5074 4289 2814 4289 4898 4777 4651 4477 3937 3637 4219 3561 4606 6393 5055 3637 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.04 -0.02 -0.07 -0.02 0.01 -0.04 0.03 -0.08 -0.03 -0.03 0.06 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.02 0.05 -0.00 0.02 0.03 -0.01 0.04 0.13 -0.03 0.13 0.17 0.10 0.13 0.18 0.02 -0.02 0.05 0.08 -0.03 -0.03 0.06 0.04 0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.04 -0.05 -0.00 -0.06 -0.03 -0.00 0.06 0.11 -0.03 0.18 0.11 -0.01 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.05 -0.04 -0.06 0.06 -0.05 0.10 -0.01 -0.02 0.05 -0.03 -0.00 0.02 -0.02 -0.02 0.00 0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages