Detailed information of deep learning profile BP000444.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in testis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000444.1
Cell line/tissue: testis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR981CID
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.12 0.04 0.06 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4636 4577 4622 5516 5346 5053 4958 5116 4208 5144 5135 4049 4349 3857 6007 6963 2639 8082 2383 1386 2124 1824 598 6554 296 162 1057 7909 562 2638 124 1208 3649 4714 7928 5637 6368 5346 4802 4563 5435 4863 6210 9214 6571 4004 4732 4525 5971 6015 ]
C [ 5204 5299 5374 4423 4438 5020 5293 5210 5221 3405 3087 4859 5232 8112 4346 5258 5614 2411 5939 9053 1202 15952 18480 11101 11911 19450 1796 1312 6641 2672 136 1137 8612 6733 2791 4759 3849 4389 4470 4256 3259 2866 4340 4118 4667 4517 3392 6849 6897 4887 ]
G [ 4941 4900 4686 4597 4471 4459 4626 5299 4064 6043 7228 6276 5251 3546 3730 3959 4581 6323 9245 1607 13223 1247 394 917 195 88 439 7510 11661 772 19257 15823 2004 4089 6476 5077 4484 4969 5527 6170 7158 8645 4717 3048 3644 3900 6306 5010 3228 4639 ]
T [ 5194 5199 5293 5439 5720 5443 5098 4350 6482 5383 4525 4791 5143 4460 5892 3795 7141 3159 2408 7929 3426 952 503 1403 7573 275 16683 3244 1111 13893 458 1807 5710 4439 2780 4502 5274 5271 5176 4986 4123 3601 4708 3595 5093 7554 5545 3591 3879 4434 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.03 0.02 -0.06 -0.04 -0.03 0.04 -0.05 -0.03 -0.07 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 0.00 0.04 0.09 -0.02 0.09 0.13 0.08 0.11 0.15 0.02 -0.01 0.04 0.07 -0.02 -0.02 0.05 0.03 0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.01 0.09 -0.02 -0.02 0.01 -0.04 -0.01 0.01 0.05 0.10 -0.02 0.15 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.04 -0.05 0.03 -0.04 0.07 -0.01 -0.02 0.03 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1000

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 224

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 192

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 32

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages