Detailed information of deep learning profile BP000311.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000311.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR575WYM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.20 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.07 0.06 0.19 0.13 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4538 4081 3941 5433 6957 4970 3924 4636 4007 4275 4960 4996 5179 5305 4631 3018 4648 5452 2127 520 13071 1452 3467 16102 361 7854 1373 401 600 3229 7916 1954 3026 7053 3577 5880 4575 5132 4619 4496 5266 6342 4287 5189 5413 5756 5386 5233 5269 5230 ]
C [ 4774 3797 5170 6167 4246 4143 3557 5016 7898 6883 6128 5612 5294 4753 5248 6620 4368 2451 15076 19357 1103 10957 7314 624 94 190 887 176 1117 14311 1263 10206 6456 4841 4245 3857 3732 5403 6495 7424 6296 4227 5604 4741 4722 4605 4806 4865 5123 5028 ]
G [ 5075 6676 6496 3837 4755 4810 4542 4603 3379 3808 4520 4962 4639 4227 5030 3277 6484 8693 1569 244 3025 7147 1717 2097 19651 12035 11285 19433 16793 928 9885 5786 2241 5986 5155 4467 8262 5398 5062 3238 3505 5474 5476 5518 5242 4660 4677 5502 5385 5363 ]
T [ 5930 5763 4710 4880 4359 6394 8294 6062 5033 5351 4709 4747 5205 6032 5408 7402 4817 3721 1545 196 3118 761 7819 1494 211 238 6772 307 1807 1849 1253 2371 8594 2437 7340 6113 3748 4384 4141 5159 5250 4274 4950 4869 4940 5296 5448 4717 4540 4696 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.10 -0.05 0.06 -0.08 -0.05 -0.06 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.01 0.14 0.20 -0.02 0.14 0.07 0.01 -0.02 -0.06 0.01 -0.04 -0.02 0.15 -0.01 0.08 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.03 0.01 0.05 0.07 -0.02 -0.02 0.10 0.07 -0.02 0.04 0.21 0.14 0.12 0.20 0.15 -0.03 0.15 0.06 -0.00 0.04 0.03 0.00 0.05 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.03 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.07 -0.04 -0.05 -0.09 0.03 -0.05 0.01 -0.03 -0.07 -0.02 0.04 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1202

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 498

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 480

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 418

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 341

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 282

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages