Detailed information of deep learning profile BP000316.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000316.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR587KPW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.05 0.04 0.13 0.08 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3884 3359 3191 4864 6346 4408 3175 4060 3318 3581 4236 4503 4749 4788 4082 2436 3807 4958 1744 469 12174 1002 2811 14880 211 7195 842 281 413 2590 7372 1745 2427 6516 3123 5395 3799 4428 4152 3659 4596 5943 3671 4470 4802 5291 4720 4521 4683 4545 ]
C [ 4172 3083 4423 5516 3589 3257 2712 4225 7137 6188 5565 4896 4461 3726 4305 5579 3512 1839 13625 16815 709 10097 6686 485 73 162 604 116 746 12791 908 8824 5925 4285 3541 3166 2982 4822 5922 7112 5816 3367 4886 4039 3960 3769 3998 4151 4410 4521 ]
G [ 4415 6123 5964 3117 4150 4105 3836 3894 2671 3038 3806 4057 3850 3555 4376 2551 6105 7592 1071 189 2579 6002 1304 1371 17217 10076 9830 16993 14958 643 8468 5372 1747 4923 4666 3741 7633 4697 4077 2339 2564 4724 4680 4807 4412 3758 3887 4860 4631 4520 ]
T [ 5139 5045 4032 4113 3525 5840 7887 5431 4484 4803 4003 4154 4550 5541 4847 7044 4186 3221 1170 137 2148 509 6809 874 109 177 6334 220 1493 1586 862 1669 7511 1886 6280 5308 3196 3663 3459 4500 4634 3576 4373 4294 4436 4792 5005 4078 3886 4024 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.04 0.05 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.09 0.14 -0.03 0.09 0.04 -0.00 -0.02 -0.05 -0.00 -0.04 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.01 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.02 0.02 0.14 0.10 0.08 0.13 0.10 -0.02 0.10 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.02 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.07 0.02 -0.03 0.01 -0.02 -0.05 -0.02 0.02 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 342

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 92

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages