Detailed information of deep learning profile BP000382.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000382.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR805YLE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.07 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3539 2937 2678 4605 6130 4069 2801 3830 2811 3284 4020 4350 4491 4439 3883 2067 3412 4848 1420 198 11867 700 2452 13809 157 6959 604 210 438 2223 7056 1668 2209 6259 2926 5175 3603 3909 3993 3329 4249 5772 3306 4167 4518 5102 4396 4121 4369 4263 ]
C [ 3420 2252 3823 4761 2839 2505 1917 3500 6539 5336 4777 4355 3749 2909 3394 4578 2860 1273 12490 15188 375 9774 5736 281 13 66 325 56 481 11417 644 7511 5039 3591 2829 2620 2481 4376 5128 6333 5028 2610 4215 3329 3357 3004 3167 3438 3584 3738 ]
G [ 3572 5626 5425 2339 3483 3286 2962 3032 2006 2334 3089 3115 3036 2764 3592 1859 5382 6482 708 51 1796 4694 762 829 15282 8392 8197 15084 13318 441 7174 4946 1435 4174 3907 2949 6422 3809 3215 1742 1831 3991 3786 3927 3531 3005 3160 4240 3898 3766 ]
T [ 4981 4697 3586 3807 3060 5652 7832 5150 4156 4558 3626 3692 4236 5400 4643 7008 3858 2909 894 75 1474 344 6562 593 60 95 6386 162 1275 1431 638 1387 6829 1488 5850 4768 3006 3418 3176 4108 4404 3139 4205 4089 4106 4401 4789 3713 3661 3745 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.00 -0.03 0.03 -0.03 -0.02 0.08 -0.04 0.04 -0.05 -0.04 -0.03 -0.01 0.02 -0.01 -0.01 0.03 -0.02 0.01 -0.00 -0.00 ]
C [ 0.02 0.01 0.01 0.02 0.06 0.04 -0.00 0.11 0.16 -0.01 0.11 0.05 0.00 -0.01 -0.04 0.02 -0.02 -0.02 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.06 -0.01 -0.00 0.08 0.05 -0.01 0.03 0.16 0.12 0.09 0.15 0.11 -0.01 0.11 0.04 -0.00 0.03 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.03 -0.05 0.05 -0.04 -0.04 -0.07 0.01 -0.04 0.00 -0.02 -0.05 -0.02 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 185

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000101.1 CTCF ENCSR000DWX keratinocyte Homo sapiens MA0139.2
BP000102.1 CTCF ENCSR000DWY fibroblast of lung Homo sapiens MA0139.2
BP000103.1 CTCF ENCSR000DXD epithelial cell of proximal tubule Homo sapiens MA0139.2
BP000104.1 CTCF ENCSR000DXI bronchial epithelial cell Homo sapiens MA0139.2
BP000105.1 CTCF ENCSR000DXQ SK-N-SH Homo sapiens MA0139.2
BP000106.1 CTCF ENCSR000DXW WERI-Rb-1 Homo sapiens MA0139.2
BP000107.1 CTCF ENCSR000DYB WI38 Homo sapiens MA0139.2
BP000108.1 CTCF ENCSR000DYD A549 Homo sapiens MA0139.2
BP000109.1 CTCF ENCSR000DZN GM12878 Homo sapiens MA0139.2
BP000110.1 CTCF ENCSR000EFI IMR-90 Homo sapiens MA0139.2
Showing 10 profiles of page 11 from 45 pages