Detailed information of deep learning profile BP000109.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000109.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DZN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.08 -0.00 0.02 -0.01 -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.11 -0.00 0.04 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.09 0.06 0.20 0.13 -0.00 0.07 0.01 -0.00 0.01 0.00 -0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.01 0.01 0.00 ]

Frequency matrix

       
A [ 4141 5293 6312 4926 4056 4544 4045 4352 4892 5002 4963 5233 4630 3486 4689 5396 2443 1341 11614 1924 3638 15153 514 6864 1888 398 632 3318 8058 1916 2964 6985 3562 5957 4383 5183 4546 4407 5106 6303 4261 5083 5400 5573 5265 5237 5222 5149 5173 4932 ]
C [ 5322 6127 4660 4555 4081 5291 7637 6788 6148 5771 5575 5051 5596 6725 4640 2882 14388 18357 1739 9879 7603 744 174 181 880 124 830 14458 1269 10578 6856 5246 4410 4124 3824 5411 6706 7848 6536 4359 5588 5034 4817 4887 4983 5173 5292 5241 5194 5283 ]
G [ 6447 4254 5026 4990 4979 4912 3836 4233 4769 5061 4983 4628 5253 3602 6376 8636 2077 492 3412 7776 2370 2759 19574 13345 10896 19708 17373 874 10019 5824 2071 5899 5452 4451 8587 5763 5329 3290 3618 5522 5841 5610 5452 4941 4922 5563 5584 5460 5276 5582 ]
T [ 4695 4931 4607 6134 7489 5858 5087 5232 4796 4771 5084 5693 5126 6792 4900 3691 1697 415 3840 1026 6994 1949 343 215 6941 375 1770 1955 1259 2287 8714 2475 7181 6073 3811 4248 4024 5060 5345 4421 4915 4878 4936 5204 5435 4632 4507 4755 4962 4808 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.10 -0.05 0.06 -0.08 -0.06 -0.06 -0.02 0.03 -0.03 -0.02 0.04 -0.02 0.02 -0.00 0.01 0.01 ]
C [ 0.02 0.01 0.02 0.05 0.04 -0.01 0.13 0.20 -0.01 0.13 0.06 -0.00 -0.03 -0.06 0.01 -0.04 -0.03 0.16 -0.01 0.09 0.06 0.05 0.02 0.02 0.01 0.03 0.03 ]
G [ 0.02 0.01 0.02 0.01 0.05 0.07 -0.02 -0.02 0.08 0.06 -0.01 0.03 0.20 0.16 0.12 0.21 0.16 -0.02 0.16 0.06 -0.01 0.04 0.03 0.00 0.05 0.02 0.02 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.09 -0.02 -0.06 0.07 -0.02 -0.03 -0.08 0.04 -0.03 0.01 -0.02 -0.07 -0.01 0.04 -0.05 0.04 0.02 -0.01 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 899

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 28

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages