Detailed information of deep learning profile BP000105.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000105.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DXQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 0.00 0.14 0.21 0.07 0.10 0.23 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.22 0.12 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5363 4948 5238 5842 5688 5399 5367 5512 4974 5635 5408 4656 4805 4387 6698 7716 3232 9260 3003 1800 2389 1959 523 6351 369 231 1829 8180 910 4159 417 1604 4316 5395 7801 5830 6723 5711 5366 5367 5819 5600 6550 8766 6753 4911 5202 5069 6290 6306 ]
C [ 6159 6462 6362 5808 5843 6331 6304 6415 6121 4950 4643 6513 6318 9087 5487 6291 7140 3110 6257 11131 1545 18161 21719 13449 15461 22469 2772 2360 8597 3848 628 2078 9639 7427 3957 5852 5084 5662 5792 5444 4625 4362 5582 5424 5822 5546 4756 7646 7710 6028 ]
G [ 5950 6147 5894 5842 5762 5605 5840 6298 5609 6892 7947 6874 6225 4862 4888 5096 5513 7033 11314 2495 15100 1994 377 1085 260 131 717 9034 11642 1922 20931 16992 2987 5299 7798 6527 5707 6314 6404 7026 8000 9040 5799 4563 4946 5209 7244 6115 4565 5660 ]
T [ 5732 5647 5710 5712 5911 5869 5693 4979 6500 5727 5206 5161 5856 4868 6131 4101 7319 3801 2630 7778 4170 1090 585 2319 7114 373 17886 3630 2055 13275 1228 2530 6262 5083 3648 4995 5690 5517 5642 5367 4760 4202 5273 4451 5683 7538 6002 4374 4639 5210 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.03 0.00 -0.05 0.03 -0.08 -0.04 -0.03 0.07 -0.07 -0.02 -0.10 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.05 0.01 0.03 0.03 -0.00 0.05 0.15 -0.02 0.16 0.22 0.14 0.17 0.24 0.05 -0.00 0.07 0.09 -0.03 -0.03 0.07 0.05 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.08 -0.01 0.15 -0.03 -0.04 0.00 -0.07 -0.04 0.00 0.08 0.15 -0.01 0.23 0.15 -0.01 0.05 0.07 0.02 0.01 0.02 0.03 ]
T [ -0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.07 -0.07 -0.07 0.05 -0.06 0.12 -0.01 -0.02 0.05 -0.04 -0.02 0.02 -0.02 -0.03 -0.00 0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 832

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 140

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages