Detailed information of deep learning profile BP000382.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000382.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR805YLE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.07 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 3745 3661 3713 4789 4401 4106 4089 4205 3139 4404 4108 3176 3418 3006 4768 5850 1488 6829 1387 638 1431 1275 162 6386 95 60 593 6562 344 1474 75 894 2909 3858 7008 4643 5400 4236 3692 3626 4558 4156 5150 7832 5652 3060 3807 3586 4697 4981 ]
C [ 3766 3898 4240 3160 3005 3531 3927 3786 3991 1831 1742 3215 3809 6422 2949 3907 4174 1435 4946 7174 441 13318 15084 8197 8392 15282 829 762 4694 1796 51 708 6482 5382 1859 3592 2764 3036 3115 3089 2334 2006 3032 2962 3286 3483 2339 5425 5626 3572 ]
G [ 3738 3584 3438 3167 3004 3357 3329 4215 2610 5028 6333 5128 4376 2481 2620 2829 3591 5039 7511 644 11417 481 56 325 66 13 281 5736 9774 375 15188 12490 1273 2860 4578 3394 2909 3749 4355 4777 5336 6539 3500 1917 2505 2839 4761 3823 2252 3420 ]
T [ 4263 4369 4121 4396 5102 4518 4167 3306 5772 4249 3329 3993 3909 3603 5175 2926 6259 2209 1668 7056 2223 438 210 604 6959 157 13809 2452 700 11867 198 1420 4848 3412 2067 3883 4439 4491 4350 4020 3284 2811 3830 2801 4069 6130 4605 2678 2937 3539 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.02 -0.05 -0.02 0.00 -0.04 0.01 -0.07 -0.04 -0.04 0.05 -0.05 -0.03 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.00 0.04 0.11 -0.01 0.11 0.15 0.09 0.12 0.16 0.03 -0.01 0.05 0.08 -0.00 -0.01 0.06 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.02 0.02 -0.04 -0.01 0.00 0.05 0.11 -0.01 0.16 0.11 -0.00 0.04 0.06 0.02 0.01 0.01 0.02 ]
T [ -0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.01 0.02 -0.01 -0.03 -0.04 -0.05 0.04 -0.04 0.08 -0.02 -0.03 0.03 -0.03 -0.00 0.02 -0.02 -0.02 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 185

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages