Detailed information of deep learning profile BP000110.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in IMR-90 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000110.1
Cell line/tissue: IMR-90
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000EFI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.05 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4633 4191 4007 5268 6835 5036 3986 4657 3982 4236 5004 5119 4935 5168 4468 3277 4615 5381 2254 1013 11962 1803 3434 15876 399 6651 2190 505 936 3902 7036 2318 3380 6622 3774 5650 4360 5321 4561 4608 5165 5842 4555 5083 5237 5395 5278 5179 5091 5096 ]
C [ 5109 4217 5381 6506 4724 4444 4059 5215 8133 7295 6371 5763 5623 5150 5852 7207 4829 2777 15160 19064 1629 10438 8055 752 146 311 1034 224 1696 13508 2066 10253 6631 5015 4494 4383 4253 5441 6402 7299 6272 4843 5594 5033 5021 5085 5058 5208 5488 5350 ]
G [ 5385 6862 6715 4248 5020 5183 4846 5035 3750 4166 4704 5163 4974 4579 5323 3541 6601 8748 1922 427 3506 7752 2239 2561 20052 13539 12060 19747 16480 1417 10134 5538 2672 6309 5596 4884 8419 5770 5648 3958 4259 5714 5695 5810 5649 5204 5270 5741 5722 5497 ]
T [ 5727 5584 4751 4832 4275 6191 7963 5947 4989 5157 4775 4809 5322 5957 5211 6829 4809 3948 1518 350 3757 861 7126 1665 257 353 5570 378 1742 2027 1618 2745 8171 2908 6990 5937 3822 4322 4243 4989 5158 4455 5010 4928 4947 5170 5248 4726 4553 4911 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.04 0.04 -0.05 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.03 -0.01 0.10 0.16 -0.02 0.10 0.04 -0.01 -0.03 -0.06 -0.00 -0.03 -0.02 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.00 0.04 0.05 -0.02 -0.02 0.06 0.04 -0.01 0.02 0.16 0.11 0.09 0.15 0.11 -0.02 0.11 0.04 -0.01 0.02 0.02 0.00 0.04 0.01 ]
T [ 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.04 0.05 -0.02 -0.03 -0.06 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 456

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 208

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages