Detailed information of deep learning profile BP000370.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000370.1
Cell line/tissue: pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR774PGN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4347 3750 3519 5391 7068 4874 3500 4467 3490 3965 4748 5001 5226 5238 4545 2671 4252 5527 1880 435 13439 1060 3006 16381 230 7630 955 307 538 2879 8175 2049 2812 7080 3618 5975 4248 4917 4547 4082 5209 6530 4102 5016 5377 5896 5220 5016 5143 5025 ]
C [ 4454 3149 4789 5894 3771 3430 2845 4490 7893 6708 6016 5312 4844 4192 4615 5967 3790 1886 14967 18480 844 11205 7212 486 67 165 614 164 942 13727 1143 9410 6285 4573 3760 3366 3300 5229 6327 7489 6188 3738 5203 4295 4235 4100 4207 4453 4704 4796 ]
G [ 4708 6681 6496 3307 4407 4416 4006 4163 2838 3164 4021 4306 4126 3699 4698 2743 6485 8202 1105 156 2531 6406 1336 1393 18806 11248 10620 18470 16129 849 8858 5782 1992 5407 4982 4043 8086 5026 4501 2650 2786 5004 4993 5104 4728 4053 4265 5247 5004 4955 ]
T [ 5705 5634 4410 4622 3968 6494 8863 6094 4993 5377 4429 4595 5018 6085 5356 7833 4687 3599 1262 143 2400 543 7660 954 111 171 7025 273 1605 1759 1038 1973 8125 2154 6854 5830 3580 4042 3839 4993 5031 3942 4916 4799 4874 5165 5522 4498 4363 4438 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.01 -0.02 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.05 0.05 -0.06 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.05 0.04 -0.01 0.12 0.17 -0.03 0.11 0.05 -0.00 -0.02 -0.07 -0.00 -0.04 -0.03 0.11 -0.02 0.06 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.05 -0.03 -0.01 0.08 0.05 -0.01 0.02 0.17 0.13 0.10 0.16 0.11 -0.02 0.12 0.04 -0.00 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.07 -0.03 -0.05 0.06 -0.04 -0.05 -0.08 0.02 -0.04 0.00 -0.03 -0.06 -0.02 0.02 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 71

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000101.1 CTCF ENCSR000DWX keratinocyte Homo sapiens MA0139.2
BP000102.1 CTCF ENCSR000DWY fibroblast of lung Homo sapiens MA0139.2
BP000103.1 CTCF ENCSR000DXD epithelial cell of proximal tubule Homo sapiens MA0139.2
BP000104.1 CTCF ENCSR000DXI bronchial epithelial cell Homo sapiens MA0139.2
BP000105.1 CTCF ENCSR000DXQ SK-N-SH Homo sapiens MA0139.2
BP000106.1 CTCF ENCSR000DXW WERI-Rb-1 Homo sapiens MA0139.2
BP000107.1 CTCF ENCSR000DYB WI38 Homo sapiens MA0139.2
BP000108.1 CTCF ENCSR000DYD A549 Homo sapiens MA0139.2
BP000109.1 CTCF ENCSR000DZN GM12878 Homo sapiens MA0139.2
BP000110.1 CTCF ENCSR000EFI IMR-90 Homo sapiens MA0139.2
Showing 10 profiles of page 11 from 45 pages