Detailed information of deep learning profile BP000370.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000370.1
Cell line/tissue: pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR774PGN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.16 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4438 4363 4498 5522 5165 4874 4799 4916 3942 5031 4993 3839 4042 3580 5830 6854 2154 8125 1973 1038 1759 1605 273 7025 171 111 954 7660 543 2400 143 1262 3599 4687 7833 5356 6085 5018 4595 4429 5377 4993 6094 8863 6494 3968 4622 4410 5634 5705 ]
C [ 4955 5004 5247 4265 4053 4728 5104 4993 5004 2786 2650 4501 5026 8086 4043 4982 5407 1992 5782 8858 849 16129 18470 10620 11248 18806 1393 1336 6406 2531 156 1105 8202 6485 2743 4698 3699 4126 4306 4021 3164 2838 4163 4006 4416 4407 3307 6496 6681 4708 ]
G [ 4796 4704 4453 4207 4100 4235 4295 5203 3738 6188 7489 6327 5229 3300 3366 3760 4573 6285 9410 1143 13727 942 164 614 165 67 486 7212 11205 844 18480 14967 1886 3790 5967 4615 4192 4844 5312 6016 6708 7893 4490 2845 3430 3771 5894 4789 3149 4454 ]
T [ 5025 5143 5016 5220 5896 5377 5016 4102 6530 5209 4082 4547 4917 4248 5975 3618 7080 2812 2049 8175 2879 538 307 955 7630 230 16381 3006 1060 13439 435 1880 5527 4252 2671 4545 5238 5226 5001 4748 3965 3490 4467 3500 4874 7068 5391 3519 3750 4347 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.02 -0.02 -0.06 -0.03 0.00 -0.04 0.02 -0.08 -0.05 -0.04 0.06 -0.05 -0.03 -0.07 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.01 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.00 0.04 0.12 -0.02 0.11 0.16 0.10 0.13 0.17 0.02 -0.01 0.05 0.08 -0.01 -0.03 0.05 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.06 -0.02 0.11 -0.03 -0.04 -0.00 -0.07 -0.02 -0.00 0.05 0.11 -0.03 0.17 0.12 -0.01 0.04 0.05 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.05 -0.06 0.05 -0.05 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.02 -0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 71

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages