Detailed information of deep learning profile BP000200.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000200.1
Cell line/tissue: left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR255SQR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.08 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3885 3789 3858 4626 4395 4192 4043 4265 3516 4233 4325 3324 3605 3164 4939 5805 2108 6882 1890 1103 1681 1478 431 5579 289 182 1031 6454 551 2321 162 1093 3071 4071 6401 4557 5343 4421 3998 3824 4476 4206 5163 7661 5380 3288 3894 3715 4765 4906 ]
C [ 4517 4549 4660 4024 3884 4396 4685 4535 4532 2980 2759 4248 4601 7021 3864 4504 4965 2132 5057 8152 1109 13718 15774 9441 10265 16378 1531 1430 5707 2722 220 1221 7348 5652 2616 4187 3437 3794 4002 3813 3015 2655 3905 3590 4175 4058 3034 5982 6032 4244 ]
G [ 4301 4313 4135 3938 3963 3988 4064 4730 3590 5377 6351 5508 4600 3253 3248 3557 4101 5482 8182 1326 11616 1176 407 912 302 189 615 6471 9729 981 16243 13134 1938 3689 5644 4483 3917 4459 4858 5380 6042 7187 4102 2739 3357 3448 5491 4362 2949 4195 ]
T [ 4346 4398 4396 4461 4807 4473 4257 3519 5411 4459 3614 3969 4243 3611 4998 3183 5875 2553 1920 6468 2643 677 437 1117 6193 300 13872 2694 1062 11025 424 1601 4692 3637 2388 3822 4352 4375 4191 4032 3516 3001 3879 3059 4137 6255 4630 2990 3303 3704 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.07 -0.04 -0.04 0.05 -0.06 -0.03 -0.07 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.01 0.04 0.11 -0.03 0.11 0.15 0.09 0.12 0.15 0.02 -0.02 0.05 0.08 -0.02 -0.02 0.05 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.04 0.05 -0.01 0.11 -0.03 -0.03 0.00 -0.06 -0.01 -0.01 0.05 0.11 -0.03 0.17 0.11 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.01 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.05 -0.05 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 642

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 548

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 53

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000101.1 CTCF ENCSR000DWX keratinocyte Homo sapiens MA0139.2
BP000102.1 CTCF ENCSR000DWY fibroblast of lung Homo sapiens MA0139.2
BP000103.1 CTCF ENCSR000DXD epithelial cell of proximal tubule Homo sapiens MA0139.2
BP000104.1 CTCF ENCSR000DXI bronchial epithelial cell Homo sapiens MA0139.2
BP000105.1 CTCF ENCSR000DXQ SK-N-SH Homo sapiens MA0139.2
BP000106.1 CTCF ENCSR000DXW WERI-Rb-1 Homo sapiens MA0139.2
BP000107.1 CTCF ENCSR000DYB WI38 Homo sapiens MA0139.2
BP000108.1 CTCF ENCSR000DYD A549 Homo sapiens MA0139.2
BP000109.1 CTCF ENCSR000DZN GM12878 Homo sapiens MA0139.2
BP000110.1 CTCF ENCSR000EFI IMR-90 Homo sapiens MA0139.2
Showing 10 profiles of page 11 from 45 pages