Detailed information of deep learning profile BP000200.1

  1. Home
  2. Deep Learning Profile > BP000200.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000200.1
Cell line/tissue: left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR255SQR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.01 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.08 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3704 3303 2990 4630 6255 4137 3059 3879 3001 3516 4032 4191 4375 4352 3822 2388 3637 4692 1601 424 11025 1062 2694 13872 300 6193 1117 437 677 2643 6468 1920 2553 5875 3183 4998 3611 4243 3969 3614 4459 5411 3519 4257 4473 4807 4461 4396 4398 4346 ]
C [ 4195 2949 4362 5491 3448 3357 2739 4102 7187 6042 5380 4858 4459 3917 4483 5644 3689 1938 13134 16243 981 9729 6471 615 189 302 912 407 1176 11616 1326 8182 5482 4101 3557 3248 3253 4600 5508 6351 5377 3590 4730 4064 3988 3963 3938 4135 4313 4301 ]
G [ 4244 6032 5982 3034 4058 4175 3590 3905 2655 3015 3813 4002 3794 3437 4187 2616 5652 7348 1221 220 2722 5707 1430 1531 16378 10265 9441 15774 13718 1109 8152 5057 2132 4965 4504 3864 7021 4601 4248 2759 2980 4532 4535 4685 4396 3884 4024 4660 4549 4517 ]
T [ 4906 4765 3715 3894 3288 5380 7661 5163 4206 4476 3824 3998 4421 5343 4557 6401 4071 3071 1093 162 2321 551 6454 1031 182 289 5579 431 1478 1681 1103 1890 6882 2108 5805 4939 3164 3605 3324 4325 4233 3516 4265 4043 4192 4395 4626 3858 3789 3885 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.05 0.05 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.01 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.11 0.17 -0.03 0.11 0.05 -0.01 -0.01 -0.06 0.00 -0.03 -0.03 0.11 -0.01 0.05 0.04 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.05 -0.02 -0.02 0.08 0.05 -0.02 0.02 0.15 0.12 0.09 0.15 0.11 -0.03 0.11 0.04 -0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.07 -0.03 -0.06 0.05 -0.04 -0.04 -0.07 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 642

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 548

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 53

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages