Detailed information of deep learning profile BP000178.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000178.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR216SIK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.11 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.04 0.00 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.17 0.09 0.05 0.12 0.06 -0.00 0.03 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 ]

Frequency matrix

       
A [ 3668 3304 2991 4431 6071 4138 2863 3809 2726 3650 4003 4370 3971 4005 3401 2160 3221 4998 1321 501 10408 1257 2381 12676 161 3520 1883 766 1956 3578 5013 2920 3323 4835 3497 4397 3643 4222 3838 4025 4236 4518 3903 3939 4100 4152 4187 4217 4241 4095 ]
C [ 3356 2369 3704 4682 3073 2958 2261 3569 7011 5330 4791 3950 3790 3386 4370 5316 3776 1736 12679 14589 887 8775 5968 258 43 128 858 844 1938 7574 2483 5756 4003 3299 3029 2991 3229 3704 4125 4350 3875 3241 3617 3438 3498 3553 3525 3623 3562 3598 ]
G [ 3568 5224 5287 2563 3236 3291 2955 3141 2011 2245 3163 3353 3136 2888 3408 1928 4771 5727 716 152 1299 4884 880 1512 15092 11244 8893 12441 9530 1868 5745 3833 2677 4136 3970 3539 4897 3769 3840 3021 3385 3813 3804 3857 3747 3452 3548 3718 3704 3674 ]
T [ 4826 4521 3436 3742 3038 5031 7339 4899 3670 4193 3461 3745 4521 5139 4239 6014 3650 2957 702 176 2824 502 6189 972 122 526 3784 1367 1994 2398 2177 2909 5415 3148 4922 4491 3649 3723 3615 4022 3922 3846 4094 4184 4073 4261 4158 3860 3911 4051 ]

Hypothetical CWM

   
A [ 0.03 0.01 -0.01 0.01 -0.01 -0.01 0.00 0.00 0.01 0.01 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.05 -0.02 -0.02 0.09 -0.06 0.01 -0.05 -0.06 -0.04 -0.00 0.00 -0.01 -0.00 0.02 -0.01 ]
C [ -0.00 -0.01 -0.03 -0.00 0.06 0.03 0.03 0.02 0.00 -0.00 0.02 0.05 0.03 -0.03 0.13 0.18 -0.03 0.11 0.05 -0.03 -0.04 -0.08 -0.01 -0.03 -0.02 0.07 -0.00 0.03 0.02 0.01 0.01 ]
G [ 0.00 -0.00 -0.01 -0.01 -0.04 -0.01 -0.00 0.00 0.01 0.00 0.01 -0.02 0.04 0.04 -0.05 -0.03 0.05 0.05 -0.04 0.02 0.17 0.12 0.08 0.13 0.08 -0.02 0.06 0.02 -0.01 0.01 0.00 ]
T [ -0.01 0.01 0.04 0.01 -0.00 0.00 -0.00 0.00 0.01 0.01 0.01 0.03 -0.01 -0.01 -0.05 -0.10 -0.02 -0.07 0.06 -0.04 -0.05 -0.05 0.00 -0.03 -0.00 -0.02 -0.03 -0.00 0.01 -0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1873

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 692

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 97

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000101.1 CTCF ENCSR000DWX keratinocyte Homo sapiens MA0139.2
BP000102.1 CTCF ENCSR000DWY fibroblast of lung Homo sapiens MA0139.2
BP000103.1 CTCF ENCSR000DXD epithelial cell of proximal tubule Homo sapiens MA0139.2
BP000104.1 CTCF ENCSR000DXI bronchial epithelial cell Homo sapiens MA0139.2
BP000105.1 CTCF ENCSR000DXQ SK-N-SH Homo sapiens MA0139.2
BP000106.1 CTCF ENCSR000DXW WERI-Rb-1 Homo sapiens MA0139.2
BP000107.1 CTCF ENCSR000DYB WI38 Homo sapiens MA0139.2
BP000108.1 CTCF ENCSR000DYD A549 Homo sapiens MA0139.2
BP000109.1 CTCF ENCSR000DZN GM12878 Homo sapiens MA0139.2
BP000110.1 CTCF ENCSR000EFI IMR-90 Homo sapiens MA0139.2
Showing 10 profiles of page 11 from 45 pages