Detailed information of deep learning profile BP000178.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000178.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR216SIK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.03 -0.00 0.06 0.12 0.05 0.09 0.17 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.00 0.04 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.11 -0.00 0.01 0.01 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4051 3911 3860 4158 4261 4073 4184 4094 3846 3922 4022 3615 3723 3649 4491 4922 3148 5415 2909 2177 2398 1994 1367 3784 526 122 972 6189 502 2824 176 702 2957 3650 6014 4239 5139 4521 3745 3461 4193 3670 4899 7339 5031 3038 3742 3436 4521 4826 ]
C [ 3674 3704 3718 3548 3452 3747 3857 3804 3813 3385 3021 3840 3769 4897 3539 3970 4136 2677 3833 5745 1868 9530 12441 8893 11244 15092 1512 880 4884 1299 152 716 5727 4771 1928 3408 2888 3136 3353 3163 2245 2011 3141 2955 3291 3236 2563 5287 5224 3568 ]
G [ 3598 3562 3623 3525 3553 3498 3438 3617 3241 3875 4350 4125 3704 3229 2991 3029 3299 4003 5756 2483 7574 1938 844 858 128 43 258 5968 8775 887 14589 12679 1736 3776 5316 4370 3386 3790 3950 4791 5330 7011 3569 2261 2958 3073 4682 3704 2369 3356 ]
T [ 4095 4241 4217 4187 4152 4100 3939 3903 4518 4236 4025 3838 4222 3643 4397 3497 4835 3323 2920 5013 3578 1956 766 1883 3520 161 12676 2381 1257 10408 501 1321 4998 3221 2160 3401 4005 3971 4370 4003 3650 2726 3809 2863 4138 6071 4431 2991 3304 3668 ]

Hypothetical CWM

   
A [ 0.01 -0.02 0.01 -0.00 -0.03 -0.02 -0.00 -0.03 0.00 -0.05 -0.05 -0.04 0.06 -0.07 -0.02 -0.10 -0.05 -0.01 -0.01 0.03 0.01 0.01 0.01 0.00 -0.00 0.00 -0.00 0.01 0.04 0.01 -0.01 ]
C [ 0.00 0.01 -0.01 0.02 0.06 -0.02 0.08 0.13 0.08 0.12 0.17 0.02 -0.04 0.05 0.05 -0.03 -0.05 0.04 0.04 -0.02 0.01 0.00 0.01 0.00 -0.00 -0.01 -0.04 -0.01 -0.01 -0.00 0.00 ]
G [ 0.01 0.01 0.02 0.03 -0.00 0.07 -0.02 -0.03 -0.01 -0.08 -0.04 -0.03 0.05 0.11 -0.03 0.18 0.13 -0.03 0.03 0.05 0.02 -0.00 0.00 0.02 0.03 0.03 0.06 -0.00 -0.03 -0.01 -0.00 ]
T [ -0.01 0.02 -0.00 -0.01 0.00 -0.00 -0.04 -0.06 -0.05 0.01 -0.06 0.09 -0.02 -0.02 0.05 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.01 0.01 0.00 0.00 -0.01 -0.01 0.01 -0.01 0.01 0.03 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1873

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 692

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 97

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages