Detailed information of deep learning profile BP000175.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Panc1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000175.1
Cell line/tissue: Panc1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR203QEB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.20 0.08 0.06 0.19 0.12 0.00 0.06 0.02 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5003 4510 4391 5723 6768 5215 4097 5068 4167 4499 5110 5174 5147 5249 4783 3336 4684 5761 2483 994 12359 1979 3528 15468 328 7343 1597 444 886 3656 8010 2287 3194 7275 3957 5919 4660 5337 4874 4669 5270 6348 4690 5378 5634 5807 5397 5422 5441 5436 ]
C [ 4025 3229 4526 5035 3811 3685 3207 4349 6582 5878 5307 5054 4717 4294 4816 5821 3970 2212 13712 17520 1350 9934 6106 404 75 165 550 149 1383 12637 1548 9059 5764 4293 3654 3522 3532 4815 5411 6319 5271 3981 4690 4174 4037 4199 4258 4296 4385 4281 ]
G [ 4517 5873 5808 3646 4226 4105 4009 3913 3222 3543 3952 4058 4101 3724 4173 2937 5474 7383 1542 470 2252 6520 1661 1926 18782 11557 10232 18392 15223 1000 8354 5309 1973 5015 4495 3688 7109 4593 4728 3157 3385 4533 4805 4747 4708 4123 4199 4641 4789 4610 ]
T [ 5820 5753 4640 4961 4560 6360 8052 6035 5394 5445 4996 5079 5400 6098 5593 7271 5237 4009 1628 381 3404 932 8070 1567 180 300 6986 380 1873 2072 1453 2710 8434 2782 7259 6236 4064 4620 4352 5220 5439 4503 5180 5066 4986 5236 5511 5006 4750 5038 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.09 -0.06 0.05 -0.07 -0.05 -0.05 -0.02 0.02 -0.03 -0.03 0.03 -0.02 0.01 -0.01 0.00 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.04 -0.00 0.13 0.20 -0.00 0.13 0.06 0.00 -0.02 -0.05 0.01 -0.03 -0.01 0.15 -0.01 0.08 0.06 0.04 0.02 0.01 0.01 0.03 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.01 -0.01 0.08 0.06 -0.01 0.03 0.20 0.14 0.12 0.19 0.14 -0.01 0.14 0.06 -0.00 0.04 0.03 0.01 0.05 0.02 0.02 ]
T [ -0.00 -0.00 0.00 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.03 -0.06 0.06 -0.03 -0.04 -0.07 0.03 -0.04 0.00 -0.03 -0.06 -0.02 0.03 -0.05 0.02 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 138

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000101.1 CTCF ENCSR000DWX keratinocyte Homo sapiens MA0139.2
BP000102.1 CTCF ENCSR000DWY fibroblast of lung Homo sapiens MA0139.2
BP000103.1 CTCF ENCSR000DXD epithelial cell of proximal tubule Homo sapiens MA0139.2
BP000104.1 CTCF ENCSR000DXI bronchial epithelial cell Homo sapiens MA0139.2
BP000105.1 CTCF ENCSR000DXQ SK-N-SH Homo sapiens MA0139.2
BP000106.1 CTCF ENCSR000DXW WERI-Rb-1 Homo sapiens MA0139.2
BP000107.1 CTCF ENCSR000DYB WI38 Homo sapiens MA0139.2
BP000108.1 CTCF ENCSR000DYD A549 Homo sapiens MA0139.2
BP000109.1 CTCF ENCSR000DZN GM12878 Homo sapiens MA0139.2
BP000110.1 CTCF ENCSR000EFI IMR-90 Homo sapiens MA0139.2
Showing 10 profiles of page 11 from 45 pages