Detailed information of deep learning profile BP000175.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Panc1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000175.1
Cell line/tissue: Panc1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR203QEB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.06 0.00 0.12 0.19 0.06 0.08 0.20 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5038 4750 5006 5511 5236 4986 5066 5180 4503 5439 5220 4352 4620 4064 6236 7259 2782 8434 2710 1453 2072 1873 380 6986 300 180 1567 8070 932 3404 381 1628 4009 5237 7271 5593 6098 5400 5079 4996 5445 5394 6035 8052 6360 4560 4961 4640 5753 5820 ]
C [ 4610 4789 4641 4199 4123 4708 4747 4805 4533 3385 3157 4728 4593 7109 3688 4495 5015 1973 5309 8354 1000 15223 18392 10232 11557 18782 1926 1661 6520 2252 470 1542 7383 5474 2937 4173 3724 4101 4058 3952 3543 3222 3913 4009 4105 4226 3646 5808 5873 4517 ]
G [ 4281 4385 4296 4258 4199 4037 4174 4690 3981 5271 6319 5411 4815 3532 3522 3654 4293 5764 9059 1548 12637 1383 149 550 165 75 404 6106 9934 1350 17520 13712 2212 3970 5821 4816 4294 4717 5054 5307 5878 6582 4349 3207 3685 3811 5035 4526 3229 4025 ]
T [ 5436 5441 5422 5397 5807 5634 5378 4690 6348 5270 4669 4874 5337 4660 5919 3957 7275 3194 2287 8010 3656 886 444 1597 7343 328 15468 3528 1979 12359 994 2483 5761 4684 3336 4783 5249 5147 5174 5110 4499 4167 5068 4097 5215 6768 5723 4391 4510 5003 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.02 -0.05 0.03 -0.02 -0.06 -0.03 0.00 -0.04 0.03 -0.07 -0.04 -0.03 0.06 -0.06 -0.03 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.00 -0.00 -0.00 ]
C [ 0.02 0.02 0.05 0.01 0.03 0.04 -0.00 0.06 0.14 -0.01 0.14 0.19 0.12 0.14 0.20 0.03 -0.01 0.06 0.08 -0.01 -0.01 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.03 0.01 0.01 0.02 0.04 0.06 0.08 -0.01 0.15 -0.01 -0.03 0.01 -0.05 -0.02 0.00 0.06 0.13 -0.00 0.20 0.13 -0.00 0.04 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.00 0.00 -0.01 0.01 -0.02 0.03 -0.03 -0.03 0.02 -0.02 -0.05 -0.05 -0.07 0.05 -0.06 0.09 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 138

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages