Detailed information of deep learning profile BP000170.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF 10A using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000170.1
Cell line/tissue: MCF 10A
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR193SZD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.05 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.01 0.01 0.04 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4492 4683 4480 4237 4352 5103 4844 4675 4601 4769 4009 4884 4744 3776 4099 3565 5746 6711 2162 8105 2068 1150 1821 1521 241 6588 178 160 1283 6896 745 3098 230 1389 3633 4693 6809 5079 5582 4868 4547 4386 5103 4907 5570 7606 5937 4092 4470 4362 ]
C [ 4643 4400 4606 4715 4714 4073 4085 4629 4710 4831 4567 3108 2998 4729 4682 7293 3779 4523 5257 1827 5236 8538 669 15829 17681 9575 10865 17768 1746 1539 6861 2437 240 1371 7220 5438 2926 4185 3630 3962 4047 3961 3352 2971 4057 3923 4098 4093 3424 5712 ]
G [ 4477 4309 4334 4469 4242 4102 4093 3941 4128 4651 3806 5495 6429 5508 4670 3331 3328 3587 4213 5649 9103 1010 12781 532 65 639 138 83 446 6752 9087 1105 17121 13451 2228 3860 5606 4690 4221 4593 4952 5381 5775 6741 4269 3071 3526 3715 5280 4437 ]
T [ 4657 4877 4849 4848 4961 4991 5247 5024 4830 4018 5887 4782 4098 4256 4818 4080 5416 3448 6637 2688 1862 7571 2998 387 282 1467 7088 258 14794 3082 1576 11629 678 2058 5188 4278 2928 4315 4836 4846 4723 4541 4039 3650 4373 3669 4708 6369 5095 3758 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.02 0.01 -0.04 0.03 -0.09 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.04 -0.01 -0.00 0.02 0.01 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.05 0.14 -0.03 0.14 0.18 0.10 0.14 0.19 0.02 -0.02 0.05 0.07 -0.03 -0.03 0.06 0.04 -0.00 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.03 0.14 -0.04 -0.04 -0.00 -0.08 -0.03 -0.02 0.06 0.12 -0.02 0.19 0.12 -0.02 0.03 0.05 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.03 -0.02 0.03 -0.02 -0.06 -0.06 -0.06 0.06 -0.06 0.10 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2469

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000101.1 CTCF ENCSR000DWX keratinocyte Homo sapiens MA0139.2
BP000102.1 CTCF ENCSR000DWY fibroblast of lung Homo sapiens MA0139.2
BP000103.1 CTCF ENCSR000DXD epithelial cell of proximal tubule Homo sapiens MA0139.2
BP000104.1 CTCF ENCSR000DXI bronchial epithelial cell Homo sapiens MA0139.2
BP000105.1 CTCF ENCSR000DXQ SK-N-SH Homo sapiens MA0139.2
BP000106.1 CTCF ENCSR000DXW WERI-Rb-1 Homo sapiens MA0139.2
BP000107.1 CTCF ENCSR000DYB WI38 Homo sapiens MA0139.2
BP000108.1 CTCF ENCSR000DYD A549 Homo sapiens MA0139.2
BP000109.1 CTCF ENCSR000DZN GM12878 Homo sapiens MA0139.2
BP000110.1 CTCF ENCSR000EFI IMR-90 Homo sapiens MA0139.2
Showing 10 profiles of page 11 from 45 pages