Detailed information of deep learning profile BP000170.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF 10A using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000170.1
Cell line/tissue: MCF 10A
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR193SZD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.04 0.01 0.01 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.05 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3758 5095 6369 4708 3669 4373 3650 4039 4541 4723 4846 4836 4315 2928 4278 5188 2058 678 11629 1576 3082 14794 258 7088 1467 282 387 2998 7571 1862 2688 6637 3448 5416 4080 4818 4256 4098 4782 5887 4018 4830 5024 5247 4991 4961 4848 4849 4877 4657 ]
C [ 4437 5280 3715 3526 3071 4269 6741 5775 5381 4952 4593 4221 4690 5606 3860 2228 13451 17121 1105 9087 6752 446 83 138 639 65 532 12781 1010 9103 5649 4213 3587 3328 3331 4670 5508 6429 5495 3806 4651 4128 3941 4093 4102 4242 4469 4334 4309 4477 ]
G [ 5712 3424 4093 4098 3923 4057 2971 3352 3961 4047 3962 3630 4185 2926 5438 7220 1371 240 2437 6861 1539 1746 17768 10865 9575 17681 15829 669 8538 5236 1827 5257 4523 3779 7293 4682 4729 2998 3108 4567 4831 4710 4629 4085 4073 4714 4715 4606 4400 4643 ]
T [ 4362 4470 4092 5937 7606 5570 4907 5103 4386 4547 4868 5582 5079 6809 4693 3633 1389 230 3098 745 6896 1283 160 178 6588 241 1521 1821 1150 2068 8105 2162 6711 5746 3565 4099 3776 4744 4884 4009 4769 4601 4675 4844 5103 4352 4237 4480 4683 4492 ]

Hypothetical CWM

   
A [ -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.10 -0.06 0.06 -0.06 -0.06 -0.06 -0.02 0.03 -0.02 -0.03 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.05 0.03 -0.02 0.12 0.19 -0.02 0.12 0.06 -0.02 -0.03 -0.08 -0.00 -0.04 -0.04 0.14 -0.03 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 -0.00 0.04 0.06 -0.03 -0.03 0.07 0.05 -0.02 0.02 0.19 0.14 0.10 0.18 0.14 -0.03 0.14 0.05 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ 0.01 0.02 -0.00 -0.01 -0.04 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.09 0.03 -0.04 0.01 -0.02 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2469

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages