Detailed information of deep learning profile BP000059.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in AG09309 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000059.1
Cell line/tissue: AG09309
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.08 0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.06 0.16 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4989 4403 4189 5628 7174 5305 4156 4888 4117 4728 5151 5424 5189 5306 4676 3497 4808 5778 2260 669 12670 1832 3601 16389 348 7032 2269 633 1240 4278 7256 2708 3724 6800 4081 5878 4617 5429 4879 4853 5318 6249 4864 5393 5586 5718 5541 5495 5513 5470 ]
C [ 4862 3975 5438 6311 4498 4421 3789 5182 8216 7083 6367 5693 5513 5012 5905 7113 4758 2642 15647 19944 1460 10812 7978 646 143 374 1029 465 1888 12877 2278 9719 6341 4962 4427 4253 4227 5409 6300 7094 6261 4757 5492 5020 4942 4983 4936 5140 5227 5226 ]
G [ 5211 6907 6719 4142 4965 5025 4859 4884 3554 3970 4736 5067 4798 4424 5055 3337 6463 8562 1781 303 3057 7678 1979 2482 20439 13337 11874 19383 16032 1608 9786 5713 2961 6149 5625 4872 8073 5701 5503 4023 4280 5454 5515 5570 5520 5071 5204 5575 5597 5434 ]
T [ 6107 5884 4823 5088 4532 6418 8365 6215 5282 5388 4915 4985 5669 6427 5533 7222 5140 4187 1481 253 3982 847 7611 1652 239 426 5997 688 2009 2406 1849 3029 8143 3258 7036 6166 4252 4630 4487 5199 5310 4709 5298 5186 5121 5397 5488 4959 4832 5039 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.02 -0.04 0.03 -0.02 -0.02 0.09 -0.06 0.04 -0.06 -0.06 -0.05 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.01 -0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.13 0.19 -0.02 0.12 0.05 -0.01 -0.03 -0.06 -0.00 -0.03 -0.02 0.12 -0.01 0.07 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.06 -0.02 -0.03 0.08 0.05 -0.01 0.03 0.19 0.13 0.11 0.17 0.13 -0.01 0.12 0.04 -0.00 0.03 0.03 0.01 0.05 0.02 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.05 -0.09 -0.03 -0.06 0.06 -0.03 -0.04 -0.07 0.02 -0.05 -0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 706

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000102.1 CTCF ENCSR000DWY fibroblast of lung Homo sapiens MA0139.2
BP000103.1 CTCF ENCSR000DXD epithelial cell of proximal tubule Homo sapiens MA0139.2
BP000104.1 CTCF ENCSR000DXI bronchial epithelial cell Homo sapiens MA0139.2
BP000105.1 CTCF ENCSR000DXQ SK-N-SH Homo sapiens MA0139.2
BP000106.1 CTCF ENCSR000DXW WERI-Rb-1 Homo sapiens MA0139.2
BP000107.1 CTCF ENCSR000DYB WI38 Homo sapiens MA0139.2
BP000108.1 CTCF ENCSR000DYD A549 Homo sapiens MA0139.2
BP000109.1 CTCF ENCSR000DZN GM12878 Homo sapiens MA0139.2
BP000110.1 CTCF ENCSR000EFI IMR-90 Homo sapiens MA0139.2
BP000111.1 CTCF ENCSR000EGM K562 Homo sapiens MA0139.2
Showing 10 profiles of page 11 from 45 pages