Detailed information of deep learning profile BP000059.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in AG09309 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000059.1
Cell line/tissue: AG09309
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DPP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.16 0.06 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 0.00 0.08 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5039 4832 4959 5488 5397 5121 5186 5298 4709 5310 5199 4487 4630 4252 6166 7036 3258 8143 3029 1849 2406 2009 688 5997 426 239 1652 7611 847 3982 253 1481 4187 5140 7222 5533 6427 5669 4985 4915 5388 5282 6215 8365 6418 4532 5088 4823 5884 6107 ]
C [ 5434 5597 5575 5204 5071 5520 5570 5515 5454 4280 4023 5503 5701 8073 4872 5625 6149 2961 5713 9786 1608 16032 19383 11874 13337 20439 2482 1979 7678 3057 303 1781 8562 6463 3337 5055 4424 4798 5067 4736 3970 3554 4884 4859 5025 4965 4142 6719 6907 5211 ]
G [ 5226 5227 5140 4936 4983 4942 5020 5492 4757 6261 7094 6300 5409 4227 4253 4427 4962 6341 9719 2278 12877 1888 465 1029 374 143 646 7978 10812 1460 19944 15647 2642 4758 7113 5905 5012 5513 5693 6367 7083 8216 5182 3789 4421 4498 6311 5438 3975 4862 ]
T [ 5470 5513 5495 5541 5718 5586 5393 4864 6249 5318 4853 4879 5429 4617 5878 4081 6800 3724 2708 7256 4278 1240 633 2269 7032 348 16389 3601 1832 12670 669 2260 5778 4808 3497 4676 5306 5189 5424 5151 4728 4117 4888 4156 5305 7174 5628 4189 4403 4989 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.03 -0.01 -0.06 -0.03 -0.00 -0.05 0.02 -0.07 -0.04 -0.03 0.06 -0.06 -0.03 -0.09 -0.05 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.02 0.05 0.01 0.03 0.03 -0.00 0.04 0.12 -0.01 0.13 0.17 0.11 0.13 0.19 0.03 -0.01 0.05 0.08 -0.03 -0.02 0.06 0.04 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.07 -0.01 0.12 -0.02 -0.03 -0.00 -0.06 -0.03 -0.01 0.05 0.12 -0.02 0.19 0.13 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ -0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.05 -0.06 -0.06 0.04 -0.06 0.09 -0.02 -0.02 0.03 -0.04 -0.02 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 706

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages