Detailed information of deep learning profile BP000031.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM10248 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000031.1
Cell line/tissue: GM10248
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.01 0.02 -0.00 -0.01 -0.01 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.01 -0.00 0.02 0.05 0.00 0.12 0.21 0.08 0.07 0.23 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.02 -0.00 0.00 ]
G [ 0.01 0.01 0.04 0.00 0.11 0.00 0.00 -0.00 0.00 0.00 -0.00 0.01 0.07 0.00 0.22 0.11 -0.00 0.00 0.02 0.00 ]
T [ 0.01 -0.00 -0.01 0.01 -0.00 -0.00 -0.00 -0.00 0.04 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 41 138 28 36 29 26 6 101 5 2 23 113 19 32 2 20 45 56 106 66 88 66 40 40 75 70 62 124 168 46 55 70 4 179 48 60 85 76 72 75 73 84 73 59 78 62 77 58 76 71 ]
C [ 61 14 71 87 20 182 233 131 115 236 31 12 71 25 4 19 88 94 37 36 37 45 72 101 62 33 24 59 8 61 22 5 233 11 42 88 64 47 54 61 58 64 43 77 62 67 49 78 50 55 ]
G [ 54 69 118 20 164 33 2 4 1 1 5 73 138 15 228 184 47 35 73 82 63 58 84 42 65 126 113 23 45 53 30 164 8 10 131 60 36 73 74 54 50 53 66 43 50 58 51 47 46 46 ]
T [ 92 27 31 105 35 7 7 12 127 9 189 50 20 176 14 25 68 63 32 64 60 79 52 65 46 19 49 42 27 88 141 9 3 48 27 40 63 52 48 58 67 47 66 69 58 61 71 65 76 76 ]

Hypothetical CWM

   
A [ -0.05 0.03 -0.02 -0.07 -0.04 0.01 -0.04 0.04 -0.10 -0.04 -0.04 0.08 -0.07 -0.03 -0.09 -0.04 -0.03 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.04 -0.01 0.06 0.17 -0.01 0.16 0.21 0.15 0.17 0.24 0.04 0.00 0.08 0.09 -0.04 -0.04 0.07 0.06 0.00 0.03 0.01 0.03 0.01 ]
G [ 0.04 0.05 0.09 -0.01 0.17 -0.01 -0.05 -0.03 -0.09 -0.04 0.00 0.05 0.15 -0.03 0.24 0.15 -0.02 0.04 0.07 0.02 0.01 0.01 0.04 ]
T [ 0.04 -0.02 -0.03 0.03 -0.02 -0.07 -0.05 -0.08 0.06 -0.07 0.12 -0.01 -0.03 0.05 -0.04 -0.01 0.04 -0.02 -0.04 -0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19911

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 965

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 119

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000102.1 CTCF ENCSR000DWY fibroblast of lung Homo sapiens MA0139.2
BP000103.1 CTCF ENCSR000DXD epithelial cell of proximal tubule Homo sapiens MA0139.2
BP000104.1 CTCF ENCSR000DXI bronchial epithelial cell Homo sapiens MA0139.2
BP000105.1 CTCF ENCSR000DXQ SK-N-SH Homo sapiens MA0139.2
BP000106.1 CTCF ENCSR000DXW WERI-Rb-1 Homo sapiens MA0139.2
BP000107.1 CTCF ENCSR000DYB WI38 Homo sapiens MA0139.2
BP000108.1 CTCF ENCSR000DYD A549 Homo sapiens MA0139.2
BP000109.1 CTCF ENCSR000DZN GM12878 Homo sapiens MA0139.2
BP000110.1 CTCF ENCSR000EFI IMR-90 Homo sapiens MA0139.2
BP000111.1 CTCF ENCSR000EGM K562 Homo sapiens MA0139.2
Showing 10 profiles of page 11 from 45 pages