Detailed information of deep learning profile BP000031.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM10248 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000031.1
Cell line/tissue: GM10248
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DKP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 0.01 -0.01 -0.00 0.01 ]
C [ 0.00 0.02 0.00 -0.00 0.11 0.22 0.00 0.07 0.01 -0.00 0.00 0.00 -0.00 0.00 0.00 0.11 0.00 0.04 0.01 0.01 ]
G [ 0.00 -0.00 0.02 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.23 0.07 0.08 0.21 0.12 0.00 0.05 0.02 -0.00 0.01 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.01 -0.01 -0.00 0.02 -0.01 ]

Frequency matrix

       
A [ 76 76 65 71 61 58 69 66 47 67 58 48 52 63 40 27 48 3 9 141 88 27 42 49 19 46 65 52 79 60 64 32 63 68 25 14 176 20 50 189 9 127 12 7 7 35 105 31 27 92 ]
C [ 46 46 47 51 58 50 43 66 53 50 54 74 73 36 60 131 10 8 164 30 53 45 23 113 126 65 42 84 58 63 82 73 35 47 184 228 15 138 73 5 1 1 4 2 33 164 20 118 69 54 ]
G [ 55 50 78 49 67 62 77 43 64 58 61 54 47 64 88 42 11 233 5 22 61 8 59 24 33 62 101 72 45 37 36 37 94 88 19 4 25 71 12 31 236 115 131 233 182 20 87 71 14 61 ]
T [ 71 76 58 77 62 78 59 73 84 73 75 72 76 85 60 48 179 4 70 55 46 168 124 62 70 75 40 40 66 88 66 106 56 45 20 2 32 19 113 23 2 5 101 6 26 29 36 28 138 41 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.01 -0.04 -0.02 0.04 -0.01 -0.04 0.05 -0.03 -0.01 0.12 -0.07 0.06 -0.08 -0.05 -0.07 -0.02 0.03 -0.03 -0.02 0.04 ]
C [ 0.04 0.01 0.01 0.02 0.07 0.04 -0.02 0.15 0.24 -0.03 0.15 0.05 0.00 -0.04 -0.09 -0.03 -0.05 -0.01 0.17 -0.01 0.09 0.05 0.04 ]
G [ 0.01 0.03 0.01 0.03 0.00 0.06 0.07 -0.04 -0.04 0.09 0.08 0.00 0.04 0.24 0.17 0.15 0.21 0.16 -0.01 0.17 0.06 -0.01 0.04 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.03 -0.04 -0.09 -0.03 -0.07 0.08 -0.04 -0.04 -0.10 0.04 -0.04 0.01 -0.04 -0.07 -0.02 0.03 -0.05 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19911

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 965

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 119

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages